RNA id: AMCG00014596


Basic Information

Item Value
RNA id AMCG00014596
length 8413
RNA type mRNA
GC content 0.41
exon number 11
gene id AMCG00014596
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18853308 ~ 18878273 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTGACAGCAGCTACGGGTCCGACGGCGATACGGTGGATGGCCTGAGTCAGACCCCACCATTGCCAGAACATGGATGCCTGTGCCAGAATCCGTGGTGTTCCCTACAAGACCAGGGCATCCATTAGAAAAGAGGTCATCTCAGAAAGCTTGGTTTTGTCACTGAAGACTTTAGTAAAGAGCAGAAAAGACCTGTGCAATGTGGTGCTTGAAATGCACATGAGGGACCCTGTGTGTCTGACTGAGGCACAACCATCTATCCCTGTTGATCTGATAGACTTACTGAGATCACTACATGTACATAGTCTTAAAGATGAAGAAATGCTACTGCtcaaagacacaaaaaaacacatggaaaaaaaGGACAGTATTTCTCAGACTACATGGTCAAAAGCTATCTGTATATTAAGGTACTCTCCTGCACTTCAGAGAAGTATTGGAAACACCATGTTTGCTCTCTTAACCAAATACACTACTGGGATTAAATACGCTCTAGAACTGCACTCTCTGCAGAAGACTCTGCCAGACGCCTGCCCAACGGAGGACGATGACACTAACCAGTCAGTGTCCTCCATCGAGGATGACTTTGTGACTGCTTTTGAGCACTTAGATGAGGAGGAAATGGCAGCATCAGACAACAGTGTATCCGTGCTGGTCGGGAGCTCGAGGTCAACACTGGTGTCAGATCCTGACAGACAGAGGAGCTTTTACAGACCAAGCAGTCCTCAGAAAGGCCAAATTGATTTTGCCCTTAGCAGTTTCACCTGCACATCCCTGACCGAGTCTGAAGAGTCGGAATGTTCAAGCCCAAGTCCTATTATCTTCTTGGATGAAGAAGGCTATCAGAAGAGTATGAAAGCCAAACTTGACATTCCCAAAATACCTGTGCTCAAAGATGGAGTAGAGGACTCTGACTCTGAAGTGAGTGAGTTCTTTGACAGTTTTGATCAGTTTGATGAACTAGACCAAGCTCTTGAAAGCACATCTAAAATATTCAAGCAGCCCACCTCTGTTAGCCAGTCCCAGAAGAAGAAGTTTTCAGAGGACTGCGGTTCTAAACGGGTGTCCAGGGACTGCTCCAGGACAGCAGCTATGAACCCTCATAAATTTGACCACCCAACTCTTCCAGCCAACATAAAAAAGCCCACACCTCTCAAACCAGAATCCCCATATGGCATTCACTCTGATGTCCCCGATTCTCCAAGACCGGTCAGAGCCTCGTGTGAGGAAAATGGTACATTATTTAGTCCAGTTCGATCATCAGCCTTCAGCCCTCTAGGCAGCTGCAGCACCTCGGATTATTTTTGGAAACCAGATGAAGATAACACAGAACTGCGCAAGCCTCAAGACCTTTGCACGCTATATAAAACCTACTCAGACTATGCCAGTAACCTGTCAAAAGAAATTCTTGGTTCAGTGTGTGGGTATTCATCCCCTGTGGACATGAATCTCAATACAAATTTAAGCTGTGTCTGTCAtatgaaatttaaaaacaggAGTGGGCATCTTATGAAACTGGCCGACATCCAACAGACAGTTACTATATCCAATGCACATCAAAAATCACAAACGCTGAAGGATGGAATACAGAGATTTGCTACAGACCTGGTAGAAAGGAGTCTTGGCAGTGCCTTCAGAGATCTGCAGAAAGGAGTTTCTTCCTGTACCACTACACTCTGCCATCTGGCAGCAAGGCTAACTTCTTCAGTGTTTCAAATGGCCTTTCATGAGATCGGAATGAGGCAGGCTATTGTATTGAAGGAACGTGCCATAAATGGTTTAGCAGGCTTTTTGGTCGGGGAAGCGGTGTCTGGGGCTCTGAAAGAGTTTCACTTTGTTAAAAAGCAGATTTTCAACAACACTGTGGCAAGATTTGCTGCAGATCTTGCAGAAGAGCTGGTTTTCGAAGGGATCATGGAAGTGTGCCAGTTCTCACACCCGTCTACCCCTTTAACTCCAAGTGACTGGTCTTTCGAGCAAGAGGAAAAAGTGGTCACCTCCTATGCTACAGATCTGTCTGAATCTGTACTTCAAGAAGCATTTATAGAGTTGTCCCAGGCTGATGTCACTTTCACAACGCAGGCAGCAATCAGCGTATCTGTGGATAATATCAGATATGGAAAAACTGACCTAGACATGGCATCTGTAGTTGAGAAAAAGCCTGGCTTCTTTTTGAAGTCGCATGACACTAAATGGAGCTGCTCAGTATCTGAAGATGAATCCACTAAACCAAAAGATACTGCTAATAAGATGAAGGAGGACATGATGGATCAGACTTCTATCCCTTTCATGCAGCCTCACTATAATTCTGGATCAAAGCAGATGGACTTTTGTGAATCAGACTTAAGAAACATGCAGTCTGGCAGCAGAGGAGCACCTGAAATGCATCACTTAGTGGTGAGAGAGACCTTGGAGGTACCGGGTCGTGAAGCACCAGGACGATATGCCAGAAGGACTGGGGTGGCCGCTGAAGAGACAATAAATAACACtgagagaaaatgtaatgcatctcCTGGTACTCCACCGCCAACCccacagcagccacagcaggTGTCCCAGGAGAAGCAGTTTAAGCAGTTTTCCAAGAAACTCAAAGGCAAGCTTGCCAAGGAGTTTTCCCCTGCTACTCCTCCTTCCACACCTCATTACCAACCAGCCACTGGCCTTGACAAAGCTGGGAGTGACACAGAAAAGGCAGATTTCATGCTGAAGCTGATGAGGTCTCTCTCGGATGAAGTGGAAGGCAGCGAAGACGAGGAGGAAGATGCAGATAGTGAAGATGGGCAACCTGCCCAGACCTACCAGCGAGAGCTAAGCCCTTGTGTTGAAATGGGCCGTGCAGTACACTATGCAGACCACTTAGCTGGTACCATAGTTTCCATGGCCACTGAGATGGCCACGTTGTGTCTAGAAGATGGAAGGAAGCTTGAAGGTGAGGAAAGCAAAGGCCTTCCTTTGTGCAGTACATTGATGGGAGAGTTCTCTGAGCAGTCTTTGAACTCTTTATGGACATATGCTGGGGAAATGGCTGGGGAGGTCATCAATGACGTGAAGAAAATCGTGAGTTCTGGTCAGTGCAGACACAGAGCtttaaaaagagacagagacggcCTGTTTGAGTGTTATCAGCTTGGCTGCCACAGGGACTGTCGGTTAAGCAACATGGCAAGCCAGTGGTCTAGTGACCTCTTGGCTTCGGTAATGAATGTTCACCAAAGTAGTGGGTCAAGTGGGCTTTCATCCAAGTATCCTAGCTGTGAGAGTGTGACAGATGAGTATGCTGGATATCTTATTAGGGTACTTAAAAGGGAAGGAGGCAATAGTGAGCTTATTTTGGACCAGTATGCTAGCAGACTTGCATACAGATCTATAAAATCAGGGCTGGCACAAGCTGCCAGGAAAATTAAGCAGAAGTGTAACATGAGACTGTATTCTACAAGAAGGCTGCATCATGAAAACACTAATGAGTTTTTCAAGGGCCTCAAAGCAGAACACTCTTCCATGCACACCAAAAGGCAAGAAGATTGTCCCAGTGATGCCTCTCATTGCGCATGCCAATCTAGTGAAGGAATGAGCAGAAAGGAATACATGGAGCTTGTTGGCTTTGCAGAGTCGCTGGCCTATAACATCACTTGTGATGTCACCAGAAAACTCAGATCATCTACAGTCAGACTGCCCAAATCCCTCACAGATTCCTGCCTTTACAAAAAGTCCAAACTGGAAGACATGGCAGAGAACCtaatcaaaacaacattttcatgtTCCCTGCTACCTTACACAGAAAAGAACAAACAGTACCACAGCACTGGAAGTCTTAATGATGGTAATTACAGTGATGGTGTTATGCAAGTCATTGAACATTATGCCAGGAAAATTGTTGATGAGACCTTAGAGATGACCATGGCTTCAGCCAACCATCgttcagcagaagaaaaaagaaaaactgacagTAGTGTGTATGCTGAAAAACTATCTGAAGCTGCACTAAATTCAGCTTTGGCCGACATCACCTGTCGGTACTGTGCAATCAGAGAGCGCCCTTATTATTTTGGTGCCCAAAGTGGGGCTAAGCAGCATTTCCAGGAAATCCACAGGAGGAGAAGACAGGAATGTGATGCAAAGACCGACAACTGTTGCAGCAAAACAAGGGGATGTGGTCTTGGGATCCCAAAGATTCATATTGATTTGGAACAGAAGGCGGTTTTTGCTGAAGAAATGGTGTCGTCAGCTATTGAGAAAGCCAAGAGAGAGCTGAGCAGCACAAGCCTGACTGCAGACAGTGGGATTGGACATGATGGCGCAAGCTTTGCAGAGAGCCTCACCACAGAAATCATGACTATGGCAATGTCTAATGTCTGCCAAACTATTAATGTAAGCACTTCTGGTGATGGATTCCACACTTCCGAGTCCACTGTCAGCCAGCAGCTCAGCCTCAGTGTGGGAGACGACAGCACTGGCAGCTGGTCAAATCTCAGCTTTGAAGACGAGCATCCAGATGAGAGCAGCAGCTTCCTGCACTTGAGTGACAGTGACGGCCTTGAAGAGAAGGAGTTGGAACCCAAAGAGGATTCAGATGGACTTTTGCATGTCGAAAAGGGCCTGTTGGTGGTCAATACAGATGTCAAAGGACAGACGTTTGACCCGCAGATAAGGACAGTGTTACAGTGGATTGCTGCCTCTCACTCTGACCTCCCAGTGTTGCAGTTCTGCCAGCCTGCAGAGAAAGAGTTTCAGCTTCTGCCGTTAGTGTTGAAAAGAGCCAAGGAAAGAGATTGGAAGGTGGGAGATCTACTGCAGACGGTCTTAAAGTACTGTGAAGAGGTGGAGCAGGAGGCAGACAATCACTTTCATAAACCTTTCTTTCAGTGGCTGCTAGAGTATGCTTAGATGCAGATCTGGGAGATACCAAtttgtctgcagtttttttttttttttttttttttataattgtgaAGTGAAACAGTTCTTGAAATGAACACTTTCAACATTAACTCACTGAGCACTCACTCAGCAGTGATGTGCGTCTTGCCAAAAGTAGAGACCTAGTCAATGGACTGTTTCTGTCCTAATTGGTATTGCTTCAGCAGTTACACAGTGCTTACATAGAGGGAGCAGCCTTTGTAGCCACTACTATTTGCTTTCAGTGATGTGTGTGCATCGTACGCGTGACTGAAGGTGCTTTTTTATAATCGTCTGCATATCTACatcattatataaacatttgtgGCCATTTGTGCATTATAGATCTATGCCTTGTTCttgttattgtaaaataattgagGCAGCACCATAAAAGTAAGTATTTTCACCAGGGGAAACCCCATTGCTTAAGTAAGCCATTCATCAACACACTGGTATTGCTTACTCTCCCCCTTAGTATGGTTTTAACATGTCAGGGACCAGCCTCAGGCTTTTTATTTAGCTTTGTATTTCTGTGAATCTAAGGTGCAGCAAAAACTCTTTATTTCAGGTCAATTGAGATTActataattaatatttctgggaagttaaaaacaaatgtttacctCATATGCATTGCAATGATTTCATATTTCAGTGAAACACAAGTTATTCAGATATTCAAAATCAGAATTGATTTGGTTGGACTACATGCAGTGTAAACATATAGATTACATTCTGAGCCAAAGATTTCTGGCTTGATAAAATCACAGAATCCTGACTTCTGTTCTTTAACAACAAACCTGTGTATTTATTCCTCACTTTCTGATGCTTTAAAGATCTTGTTATTGAAAAAGCCCTGCAAAAACAAGATTGTAACTTACGTCTGTAAGTACAGCATGCAATTTGATTTCACTGTATCAAGAccattcctttaatttgtcttacATGAACCACAAAAGGCaggatgaaaagaaaattgtatattcttaaaatcgTAATACAagattcatatatattaaaatgtatttacaaaacttGGGCAATGCATGTGAAGTAAAATTATTTCGTAGAGATGCTTTCTTGGCCTTTAAGAAGGGTAGACTGTATCTCAACCATTAGTACACTGCAAATCAGTAGTGTTAAATTAAACTGTAGAAATTTAACTTGAATGTACATTTCTATATTCAAGGTTGATTCAATGCATTTTCTGCAAAATGATggaatgattatgattattgcaGTAGTCCATAGATGCACTGAAACACTGTGTACCGTTTGTCTAACTTTGCCATAGTTAAATTAGTGCACACACTACATCATTTCATTTGAATAAGCTTAGACTGCAGCAAGCGTAGAATTTCCATTATGACTGTGTTTTATCCATCAAGTCACACTGGAAGTGGTCTCTAGTGATACAGAAATACCGTAGTAGTCGTGACACAACTAGAGTCTGCATCATCAGACCTCAATGAGTTCATACTCATCTAACATAacttgttttgtgtgtcatcataCACTCCAGTAAGTTACTTCTAAAAGGCCGTCTTGAGGGACAGGAATTTTGCAGCCAAATTAAGTTTGGTTACTGCAATGGCTTCATAAATCTTACCTATATAATTCTGTAGTTGAAATAGTATAGTGGGGGTAGATGGATAGTCTGAGAATGCACTTTTTGGTTTCTAGAGAATATTATGCATTTAGGGGATACTAACATTTGTGAGAGATGTACATACCTAATTCTGATGTTGATGTTTGAACCAAAGAAAGAATATGAAATCTTTGTACTTGTATTTCTTGCTGAagcaaattaacacattttgcagttgtattacatttcttgctGTGTGATTTGAAGTAAATTGGCCTCAGTCCATGTGCTGCAGCAGTGAGATCTACAGAACAGTTTTGACTTCTGACCCAATACTATGTGTCATAGCTTGAGTTGAAGCCAACACATTATGAAATTGTCAAGTAGCCATAGGGTCAGATGTTACGCTGGTAAAAATGCTCAAaccagtttgtttaaaatgaggtcagtatttttccaaaagtacaaatacaagTTAATACATTCAATATTGAATATTTGGGTTTTCACATCTATGTAATGTTATTAAGAGCaggtttcaaaataatttaaatcgttttttgtttttttattttttcgcaACTGATCCATGAATCTGGACATTTACAGATATGTATCTTAATAAAGGCTGATGTAGTTTAAATTGGGCAAACCATCATATCAGTCTTGAGAGACCTTGGCTGTGTTTGATGGAACATTTCTGAGACTCAACCGCCATGGATGGAATGTTAATGCATAATGCTATGTAAAGGCTTTTAAAAGCCCTTTTTCATGTCAGAAGTTATTCCTTAGTGATATATGCACCAGAGTGTTAAAATGGAATAACAGTTATTTGCCTGCATCTGTGAACCCAATTTCTAGCTGGCAGGAAACATATTAATTGCCTTAAAGAAGTGAAGACTTTGCTAAAGCAGCTCATTTCCACCTAGTATATATTTAGTGAAGCATGCTTTTTCAATCAATGACCTGCTTTAGGAGAAtgattaaatttatatttttataatactctggtgaagaaaacatgtattatatgAATGGTTTATCAGTATATTCCATTGATTAACTGCAATTACTATTTTAACTTACATCTGAAGAAAATTAAtgatttctgtttaattattatttacattttccttaaaTTAATTCTGACACAGCTAGTGGACATTAGTTTTAATCCAAACACCATATTACGTGACTTGAGATCCTTTTTCGTAATCCTTTCCATGATTCGGAATATACACTCTTGAAGTATAAAAGCCAAGATTTTCAACACGAAACAAATTCAACACATAACCAGTAAGGAATATTACTGGACctaaagaaatacattgataattaaattacttaaaacagATCCATTTGAACTTCTTTTTTGATGTATgtgaattatttgaataaagaaaatatgcatgTGGGTGGAGATACTGTAGAAACTAATCCCACAGAATAGTTACCTGTTGGTTCCAAACTTGTGGAGTGTAATTGAAGGGTTATTTGTGCTGTATGTTTAACAGGAGGCATTTATGTTTAGTCCTCTTATACTTAgtcactttattttatgtaccATTTGTGTACATTCCAATCTTTGGAAAAATTTGCTATTAGTGTTATTTAACAAACTGAATGTGTCATACATAAATGACTTAACAATTTAAACATAGTTTTGTTACTTGTGCAGTATTATTCTCATCCTATCACACATTGTAGCTGACCAACAAGATGTATACtgacatatattttttcctgcatatttatataatcttgccaaaaaatgtaatgaatttatGTAAGTTATAAAAGTGAATAAACTTGTCCTCTAGTACAATTGCTGTGTAGTTTCCAGATTATAAGCTTCCAGTTGCACTatgttgttaattgttttatcTGTGGCTAAGAATAAAGCTTTGTATTCATCTGTATA

Function

GO: NA

KEGG:

id description
K16527 AKAP11; A-kinase anchor protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88954 lncRNA upstream 160675 18688548 ~ 18692633 (+) True G71136
TU88779 lncRNA upstream 375280 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 384973 18465219 ~ 18468335 (+) True G71036
TU88649 lncRNA upstream 1202306 17650771 ~ 17651002 (+) True G70938
TU88613 lncRNA upstream 1362701 17489826 ~ 17490607 (+) True G70908
TU89012 lncRNA downstream 22952 18901225 ~ 18902161 (+) True G71183
TU89082 lncRNA downstream 169685 19047958 ~ 19048172 (+) True G71237
TU89148 lncRNA downstream 340044 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 340044 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA downstream 340044 19218317 ~ 19222919 (+) False G71283
AMCG00014591 mRNA upstream 7337 18803406 ~ 18845971 (+) True AMCG00014591
AMCG00014592 mRNA upstream 66781 18782057 ~ 18786527 (+) True AMCG00014592
AMCG00014587 mRNA upstream 178976 18668806 ~ 18674332 (+) True AMCG00014587
AMCG00014584 mRNA upstream 186182 18662208 ~ 18667126 (+) True AMCG00014584
AMCG00014581 mRNA upstream 194247 18645860 ~ 18659061 (+) True AMCG00014581
AMCG00014594 mRNA downstream 11499 18889772 ~ 18900200 (+) True AMCG00014594
AMCG00014595 mRNA downstream 71040 18949313 ~ 18963043 (+) True AMCG00014595
AMCG00014598 mRNA downstream 167410 19045683 ~ 19047641 (+) True AMCG00014598
AMCG00014599 mRNA downstream 170020 19048293 ~ 19056463 (+) True AMCG00014599
AMCG00014607 mRNA downstream 306006 19184279 ~ 19190953 (+) True AMCG00014607
TU88725 other upstream 578948 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1404855 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2384195 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 2720506 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3173520 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3977069 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8957230 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8990430 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9424100 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10973177 29851450 ~ 29851821 (+) True G72605

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072902 False 6069 mRNA 0.44 4 NC_007120.7 17984358 ~ 17997254 (+)