RNA id: AMCG00014597


Basic Information

Item Value
RNA id AMCG00014597
length 1779
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00014597
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18971436 ~ 18999017 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAAGCAGTGGGAAGCAGGAAAGGGAAAACGGAGGACCTGCCATGGCTGGTGTGTGTCTGTTTCTCCACAGCAGCAGATGGTGTAGGGAGCTTGGGATCAGAGCAGGCCCACATCAGTGTGCCTGTGGCTGACCCTGGTGCCTGGGCCACAGCCATGAACAACCTGGGGATTGTGCCTATGGGGCTGACTGGACAACAGCTCGTCTCAGAATCGATCTGCATCCCTGGGTTTGATCCTAGTCTGGGAATGATGACTGGAATCACTCCCATTAACCCTATGATGGCCGGGATCAGCTTGGTGCCCCCGCCCCCCGTGTCCGCAGAGCTTCCTGTCATGAAAGAGATCATTCATTGCAAGAGCTGCACTCTCTTCCCACAGAATCCAAGAGGACTCCCAGAGAATGCCAATGAGGAGATAATACGAGAAGTCTTCGACCAGTGCGGGGAAATTACTGCAATTCGAAAGAGCAAGAAGAATTTCTGCCACATTCGCTTTACTGAGGAGTTCATGGTTGATAAAGCAATCTACCTTTCAGGGTACCGCATGCGTATTGGGTCCAGCACTGATAAGAAAGACTCGGGGAGACTCCATGTGGACTTCGCGCAGGCCCGGGACGATCTGTATGAGTGGGAGTGCAAGCAGCGGCTCCTGGCACGGGAGGAACGCCACAGACGGAAGATAGAGGAGGAGAGACTGCATCCCCCCTCGCCTCCTCCCATCATGCACTTCTCAGAGCACGAGGCCGGCGTTCTGGCAGACAGGCTGAAAGATGACAATAAGTTCACAGAAGCTATTGCTGTGCTGCTCACTTGGATCGATCGCGGAGAGGTGAACCGCCGGTCTGCCAACCACTTCTACTCAATGATTCAGTCAGCTAACAGCCACGTCCGGCGCCTGATGAATGAAAAAGCATCGCATGAAGAGGAAATGGAACTGGCCAAGGAGCAATTCAAAAATGCCCTCTTGGCCATCCTAACGCAGTTTGAGCAGATTGTGGCCGTTTTCACCGCTGCTACCAGGCAAAAGGCATGGGACCATTTCTCAAAAGCACAGCGCAAGAACATAGAAATTTGGCGAAAGCAGTGCGAGGAGCTGCGCAATGCTCACAGCGAGGAGATCATGGGGATACGAAGGGAGGAGGAAATGGAGATGTCAGACGATGACTCGGAGGAAAATTCTTGCAAGAAAATGCGACTGGACGACTCAGCCCTCGCAGCCCAGGCCTACGCGCTGAAGGAGGAGAACGACAGCCTGCGTTGGCAGCTGGACGCCTACAGGAACGAGGTGGAGCTGCTGAAGCAGGAGCAGGGGAAATTCTACCGGACGGAGGAAGACCACACTAAGGAGCAGCAGCTACACTTCCTGCAGCAAACGGTGCAGAGCATGCAGCAGcaACTGTCAGATCTACAAGAAGAGTTGAAGAGTAAAGAATATGAATTAGAACAAGCAAAGGATGAAAAGAGGTGTCTGGAGGGGGAACTCTTAGCCTTAAAAGAAAAGCTACTAAACAACATGGATGCCGTGGACATGAACAACAAGGACATTCGTGAAAAGGTTGGTATCATATCCACCTTCCTTCATGTGCATCCATTTGGAGCCAACATAGAGTATTTGTGGTCTTACATCCAGAGACTGGATACCAAGATCTCCGCAGTCGAAATTGAGAGACTGATGGTACGGTTACCCCACATGTTCAAGCAGGAATTCACAGGTGTGGGAGCCACCCTTGAGAAGAGATGGAAATTCTGTGGGTTTGAAGGAATTCACACCGTGTGA

Function

GO: NA

KEGG:

id description
K24982 ENOX; ecto-NOX disulfide-thiol exchanger

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89007 lncRNA downstream 93183 18874605 ~ 18878253 (-) True G71179
TU89001 lncRNA downstream 120325 18850724 ~ 18851111 (-) True G71174
TU88981 lncRNA downstream 284090 18686498 ~ 18687346 (-) True G71160
TU88975 lncRNA downstream 301781 18668801 ~ 18669655 (-) True G71157
TU88951 lncRNA downstream 306805 18664264 ~ 18664631 (-) True G71133
TU89158 lncRNA upstream 192368 19191385 ~ 19191632 (-) True G71284
TU89162 lncRNA upstream 202786 19201803 ~ 19202950 (-) True AMCG00014604
TU89164 lncRNA upstream 213627 19212644 ~ 19214404 (-) True G71290
TU89165 lncRNA upstream 215597 19214614 ~ 19215246 (-) True G71291
TU89166 lncRNA upstream 217196 19216213 ~ 19217037 (-) True G71292
AMCG00014593 mRNA downstream 24515 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014590 mRNA downstream 193828 18776776 ~ 18777608 (-) True AMCG00014590
AMCG00014589 mRNA downstream 204776 18720805 ~ 18766660 (-) True AMCG00014589
AMCG00014588 mRNA downstream 262027 18696075 ~ 18709409 (-) True AMCG00014588
AMCG00014585 mRNA downstream 326766 18639812 ~ 18644670 (-) True AMCG00014585
AMCG00014601 mRNA upstream 115350 19114367 ~ 19122826 (-) True AMCG00014601
AMCG00014602 mRNA upstream 160912 19159929 ~ 19162787 (-) True AMCG00014602
AMCG00014600 mRNA upstream 175665 19174682 ~ 19184193 (-) True AMCG00014600
AMCG00014604 mRNA upstream 203795 19202812 ~ 19203567 (-) False AMCG00014604
AMCG00014603 mRNA upstream 218705 19217722 ~ 19225230 (-) True AMCG00014603
TU87063 other downstream 7308943 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8173289 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9654269 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10587212 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 10812846 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9330722 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10390273 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13264150 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13598445 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13598445 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074077 False 2110 mRNA 0.53 15 NC_007120.7 18319970 ~ 18568927 (-)
grasscarp (Ctenopharyngodon idella) TU330829 False 11850 TUCP 0.39 5 CI01000080 3706118 ~ 3735921 (+)