RNA id: TU89162


Basic Information

Item Value
RNA id TU89162
length 1148
lncRNA type sense_over
GC content 0.39
exon number 1
gene id AMCG00014604
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19201803 ~ 19203567 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACTTTCCTGTGCACCCTGGAGACCCTCAAGCTGGAGATCGTGATGCTGGCGCTGCGAGGAGGGTACCGCCTGCTCACCAGCCTGGACAGCTCTCGGGGATCCGTGGTGCACTGCGAGGCGCTCCACTTCGTCAAGTGAGCTCCTCCACCAACACACAGCAGCCTTTCCCTGTGTCCTAACAGCATCTGGCCTCAAGTTACAGAGTCCAAAAGGAAGATGTTGTTTTGCAGGTTACTATGTAGTTCATAGCTCCAAAGCGCCCATCTGCACATCACAGCTCGGAGTGATATATTCAGTAttgtgcgtctgtgtctgtgtatgatTTAATACGATTCATCTCGCCCGTGGCTTTCGGTTTTTAGCATCTTGGTAAGTGTCAAGTTTTATTGTGCTGCCAGAGGCTGTTTAAATGACATGGATTAACAACTCCTTGCCAAACTATTTCCTCAAATTAcagatgaagaaaataaataaatgttttagttgttttcttcaaatgaTGGAATCTTATCCAGTCATCCAAAATGAACAATGCAGTAAAGCTGTTCTTGTAGAACAAACTCGCACAGAATCCACGGTCTCTCACTTAGCTAAGCAAGTGTAAAATGTGTGCCGATTAAAGAGcattaaaatgtgaacaaaaggataagtgaaaaaaaaaattaatggtCTGTAATTGTCACATGAAGTAATCTTCGCAATGTCAAAATGCTGTGTGGCATATATGATGCAATGAAAATGCTGTAATAGAAATCACAAAAAAGGCTTCATTATCTGGTTAAAATTGATTAATGCATGcgtaaaaatatattaaacaaaactgttgttttagtttttttaattaaatctgtaatatGGGCTATTATGTTTAGTTACTATAAGTTACAAGAAATGTATCTTTGTGGAGTTCCGTTGTCTTATGACAATAAAGAGAATAACAAATTATCTAAATCGGTTCTTCTAAATAAACGtcactttataaaacaaaaccctttTCACTTGTGCCAACCACAAACACGTGAATGCACAACCTATTAATACCGTGCAGCACACATATATACGcctttgcaaaaatatatttttgaagctATTTGGCATAGTCTTTACAGCTGGCACAGTAAATCCTTCACTGTGACTGTAACGGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89158 lncRNA downstream 10171 19191385 ~ 19191632 (-) True G71284
TU89007 lncRNA downstream 323550 18874605 ~ 18878253 (-) True G71179
TU89001 lncRNA downstream 350692 18850724 ~ 18851111 (-) True G71174
TU88981 lncRNA downstream 514457 18686498 ~ 18687346 (-) True G71160
TU88975 lncRNA downstream 532148 18668801 ~ 18669655 (-) True G71157
TU89164 lncRNA upstream 9694 19212644 ~ 19214404 (-) True G71290
TU89165 lncRNA upstream 11664 19214614 ~ 19215246 (-) True G71291
TU89166 lncRNA upstream 13263 19216213 ~ 19217037 (-) True G71292
TU89167 lncRNA upstream 14954 19217904 ~ 19218128 (-) False AMCG00014603
TU89190 lncRNA upstream 49624 19252574 ~ 19255934 (-) True G71315
AMCG00014600 mRNA downstream 17610 19174682 ~ 19184193 (-) True AMCG00014600
AMCG00014602 mRNA downstream 39016 19159929 ~ 19162787 (-) True AMCG00014602
AMCG00014601 mRNA downstream 78977 19114367 ~ 19122826 (-) True AMCG00014601
AMCG00014597 mRNA downstream 202786 18971436 ~ 18999017 (-) True AMCG00014597
AMCG00014593 mRNA downstream 254882 18932137 ~ 18946921 (-) True AMCG00014593
AMCG00014603 mRNA upstream 14772 19217722 ~ 19225230 (-) True AMCG00014603
AMCG00014615 mRNA upstream 127938 19330888 ~ 19338660 (-) True AMCG00014615
AMCG00014614 mRNA upstream 139181 19342131 ~ 19345670 (-) True AMCG00014614
AMCG00014616 mRNA upstream 183665 19386615 ~ 19390852 (-) True AMCG00014616
AMCG00014623 mRNA upstream 1156196 20359146 ~ 20401033 (-) True AMCG00014623
TU87063 other downstream 7539310 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8403656 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 9884636 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 10817579 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 11043213 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 9126789 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 10186340 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 13060217 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13394512 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13394512 32597462 ~ 32619149 (-) False G73127

Expression Profile