RNA id: AMCG00014606


Basic Information

Item Value
RNA id AMCG00014606
length 4168
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00014606
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19296416 ~ 19317255 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACAATGGTTAATGACATTTGTTtacctttattgtatttaatagaaGCAGTATCCAGAGGTTATATGAGGTACATGGAGTTTGTGAATCCAAAGAGTGAAGGCAgtgaagtgaaaagaaaactAGAAACAGGTGTTCGTCATTCCTCATGCCAGCCTCAAGATGAGTATTATCTGAgtaatttcagtgttttcttgttttctcacTATGCCTCAGGGTATGTAGTTATTGAAGTACAGCCAACACCCTGTTGTGCCTTATTGTTTACATGTATTACACTAATACTGAAACattgaaaatactgaaaattaaAGAGAGCAagctataattaaaaaaaaaaacaagaactgaaCTTTGATTGAGCACATTCATTGATATGCACATTTTTAAGGGGAGGACACTCAACTTCctcattttaataaaagataTGGTGTCAAGATGTATCTTATTGAGTGGTGTCCACATGTACCTCTCactgaacagaaatgttttctCTTAAGCTGTGCAAGAGCGACTCCAGTAGATGTACCAGCCTGCCGTTTAATGCTGCCAGCAATGAAATGTACCTCTTTAGGTACCGTACCCACAAATAAGCAGGCACATCACTGAAACGGTCAAAAGTGTGTGTAGACATGCATATGAACATAAACTagatatatgtaaaataaaaaatgaaatgtaacacaTACACTAACCATTGTATATGCAATGGTATTTTAATAAGATTAATGTATATTCCAGATATATCATGATAGTATGCTAGGGTTAGAGCTGGAGACCAGGGTTTAATATTAGTGTTGTGTTTAGAGTCAAACCTAATATTAGGGTTTAGACTGGGGTTAACTATGGTAAGCTTTAAAACTAAGGGTAAGAATTAGGGTGAGGTTGCGTTAAAGCACGGATTTGTGGTTGCAGGTAGGATTTTGGTTAACTGATAGTAGATAGGTgtcatatttgtaatgtatactGTTAATCTATATTACTAtttaatgtcagtgttctgATATCAGTGGCTAATTCATGTTAATACAATGCAACAACACAAGAAAGATTGATAGCATGCAATATTATACAATGCGGCACAAAACTATATagatttattaatttccttgCATAGTAAACTTCATAGTAAACACTATACATTCAAGTTAAAAACCTTGAATGTTGATCCAAAAcgtctttatttgtattttgcttttggtGTAAAGTTTCAGAGCAAGAAATTCGCAGTCACAAGGGGCCTAAGGACATTACATAAATACTACTTCAACCACTGACCACTAGAGGGCACTACAGACTGAAtccaaatgaataataaaataagagAGCAAAAACTGGgctgtgttttttccccaaaggaTGTCTGCTGACAGAAGATAATTTGCTGGAAGCCACTTAAAGTTCTCTTGTAACCCTGGATTACAAACCGTGCCTTAAAGATGACatctttatgttttaaatgcatatgttaTTAAAGGTCTCTGGCGCCTGTTCTAACTGTGCAGTGCAAAGACAGTGCTCACACATGTGCatcaagaaagaagaaagataaACACGAAACCACACTTGGACGAAAGCTAGAAGATTTTTCAGACCGTCTGTAATGAAGTGCTAAACCTCAGGGAATGCATCACTATGGCTGCAGCAGTTCAGCAGAATGAGCTTGTTTTTGAGTTTGCCAGCAACTGCATGGAAGACGTACAACAGCTGGATGACCCGTCAGTCTTCCCTGCGGTCATTGTGGAGCAGGTGCCCAGTGCACACCTCCTGCACAACTACTCCGAGCTGGCCTGTGCAGATCACTCTGCAGACATGATCCACCACCCCCTCGACGTGGCAGAGGAACAAGTGGTCATACAGGAGGACGTCACTCTCACAGCTCATGTGTTTGTCCCGTCGGTGGGTGAGGTCATCGCTACTCCAGTTTCGCAAGTATCGATAACATCTCATGGAATTGAGCAGGCGATGGAGGGCCAACACACAGGCAGTAGGGCGGCAGCTGCGCAAACACCAGAGCAGCCCAGGAAGAAGAAAGGAAGAAAAGCGAAGCAGTCCCGGCCCGAGTCCCCAACTACGCCAGATATCTTAGTcaagaagaaaagtaaagatGGCAAAGGAAATACATTGTACCTGTGGGAGTTCTTGATGGCATTGCTGCAGGACAAGACTACATGTCCGAGGTATATAAaatggacacacagagagaagggCATCTTTAAGCTGGTGGATTCCAAGGCTGTCTCACGCCTATACTATTACCAACGTGGGATACTGGCCAAGGTAGAAGGACAGAGGTTGGTCTATCAATTTAAGGAGATGCCAAAAAATATTGTGTGCGTTGAAGAGGACGACCCTTCCTTTAACGATGAATCGACAGATACGGCAGAAGCCAATTTCCAAATTGAAGATCAACCATCAGCCCTCTCCAGCTCATCTTCAGTCAGCAGGATTTCAACAGTGAAATCCAGGGCAAAGGGACCTACAGCGTCGGGCCCCGGTGGGGCTACTGGAATGGTCCTGAAATCTGTGGGAGATGAAAATACTGCAAAGGTCGTCAAGCCCATGGGACTTATTCAGCAGCATCATTTGCCGATAGTGTCTGCAGAAATGTTGAAGAGTTTGCAGAACCTCCAGGCGCTGCAGCCAGGGCAGCATGGCTCTGTGTTTAGGACAGTCCAGCTGCTGGAGAACCTTCAGAACGTCCAGGAGGGGCCAACAGCTGGGGGCCTTCAGTGCACAACTGCAGTGCCTGCACACAGCCAGCCTGGCGACACAAACAGCCAAACGCAGATCCCAGTGGTCTTAACCCCAGGCAACCAGCAGCTCCATTCATTGACACTGCAGGCGCTCCCTCTGGGCACATTGCTTGGTGGCAAGGACCCTTCTGTAACCATAGCCTCATCCCCCAAGTTCTTCCTGCAGCCTGTCTCCTCCTGCCAGCCTGTGACGGTGCTGATGGAAAACGTCACCGTGTCTTCTCCCAAAACATTGACGGCAACTTCTCCAGTGGCGTCCACCCCCAACTCATCTCATCAACCCCCCATCGTGCTTTTGCAAGAGAGTGCTAATGTGGCAGTTTCCACCCCTTCCTCTCCAACGGGGGCTGCTGCAACATCTGTGGTGACCTTCGCAGGGGGCGGCCAGCAGCTCGTCTCCCAGCCTCCTGGGACGGTCATCGCTTCTGTCATCACAGCGCCAGACAGCAAGCAGACTGTGGAGCAGAGAGAAGACCCTCAGGACAGTGAGAGGGACAGCCACGAGCACCCATCGTTCAGGGTTGTGGTGTTGAACGATGCCTGGATCGAAGCCGAGGCAAACCGCCGTGATGCTGACGAAGACTCTGGTTAAGTTCCTTGTGGGTTGATCCTGGCCATTAAATTAAAGTGAACTAATTGAACCACATTTAGCAGTTTGGATCTGGTGTCTGTCGGCATCTTTAGATCCACAGTGAAGAGATTGCTGTTTATTAATCCTTGCCTAAAAGTGACACAAGTGtgagttgtttgtttatttatttatttttttactatggTGGCTTGCTTAACTTTACATTACAAACATCACTTGGAACAAATTGAAGAAAGTGACATAAGTGCTCAGTTGTCTCATCTTGGTATTCAGGCCTGTTTATTGATCTAACTAAGTGTAATTTCTGAATTGCTAGCTCTCTAACCTGCTTCATTTTCTGTGGCTTTTGCACTCTTTCTAATTTCTAATGATCCTCTACATTACAGATATTATATACATGGATCACTAAAGTCTGTAATGATTTCAATCAAGCCTgagtatattaattttaattaagaataattGTACAAAAAGCTTTAGATccaatacatttgaattaagcTATAATTGggacatgcatttttaaaattgtaattcttatttatttgtaaaattagTTTGTTGCCTTTTGTTAGAACATATTTTCCCAGATGCAATGCtcttaaatgcatatttttttattaacataatattGTGACCTATCTACTGGATACTATGGGCTAACCGTCTAATACCTTTTTGAGATGAGAATACTATACTTGTAAATATTGTACAGTATGTTTGACTGGATATAGTTTGTTACTAATTGTGTGagtaccatttttttttatataagttCAATAGTTCTTGAAAAAGAatacttttaataatgaaagagtgg

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway
ko04658 Th1 and Th2 cell differentiation
ko04659 Th17 cell differentiation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89148 lncRNA upstream 73497 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA upstream 73497 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA upstream 73497 19218317 ~ 19222919 (+) False G71283
TU89082 lncRNA upstream 248244 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 394255 18901225 ~ 18902161 (+) True G71183
TU89246 lncRNA downstream 607647 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 869359 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 1607313 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 1994335 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2802328 22119583 ~ 22122533 (+) True G71452
AMCG00014609 mRNA upstream 4666 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014608 mRNA upstream 43809 19237570 ~ 19252607 (+) True AMCG00014608
AMCG00014610 mRNA upstream 59627 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014612 mRNA upstream 80083 19214276 ~ 19216333 (+) True AMCG00014612
AMCG00014613 mRNA upstream 99577 19193419 ~ 19196839 (+) True AMCG00014613
AMCG00014611 mRNA downstream 2614 19319869 ~ 19330918 (+) True AMCG00014611
AMCG00014605 mRNA downstream 63176 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014617 mRNA downstream 525897 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014618 mRNA downstream 642334 19959589 ~ 20021694 (+) True AMCG00014618
AMCG00014619 mRNA downstream 707266 20024521 ~ 20073070 (+) True AMCG00014619
TU88725 other upstream 1022056 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1847963 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2827303 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3163614 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3616628 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3538087 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8518248 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8551448 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 8985118 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10534195 29851450 ~ 29851821 (+) True G72605

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001747 True 2364 mRNA 0.51 9 NC_007112.7 13958282 ~ 13989643 (-)