RNA id: AMCG00014608


Basic Information

Item Value
RNA id AMCG00014608
length 2427
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00014608
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19237570 ~ 19252607 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGTGGTGGATCTGTCTGTCTTGGAcctgagtgagagagaaaccCGAGAGAAGCTCTCTCTCTGGGACCGGAGATCCGACGCCATGGCGCCcttgacagagagacagaccgaCTCCATCCTGGAGATCCGAGCAGCCGCCGAGAACCTACCAATTCCGGCAGAGGACCTGTGCAGCCTGACGTCCCGCTCCCTGTGTGCGCCGCTAACAGCCATGGTCCCCGCCTCCACCGAGGACATCTTGCTCAAGGGCTTCCAGTCCCTCGGCCTGGAGAACGAAAGGATAGAGACAGCTCAGCAGTTCTTCTCTTGGTTTTCCAAACTGCAGACACAGATGGACCAAGATGAAGGAGCAAAGCACAGGCAAACCAGGGATCACCTGAGTGGTTTCCAGGAGCAGTGTGATGCGATCCTGGCCGATGTGAACACCGCCCTGCAGCACCTGGACTCTCTGCAGAAGCAGTACCTGTTCGTGTCGACCAAGACTGGGACACTGCATGAGGCCTGTGAGCAGCTGCTGAAAGAGCAGTCAGAACTGGTGGACCTGGCAGAGAGCATACAGCAGAAGCTTTCCTACTTTAATGAGCTAGAAAACATCAACACGAAGTTGAATTCTCCCACATTGTCTGTGAACAGTGAAGGTTTTATACCCATGCTATCTAAACTGGATGACTGTGTAGAGTATGTTTCCTCACATCCTAATTTCAAAGACTATCCGGTTTACTTAGTGAAATTTAAACAATGCCTTTCCAAAGCTATGCAACTGATGAAGACTCACACTgaccCAGCTGGTGTGCCTATTGTGGACAATGCTTTCACACTGTATTACGTGAAGTTCAGAGCCTCCGCTCCTAAAGTCAGAACACTCATAGAACAAATCGAACAGAGATCTGAGAAGATACCTGAGTATCAGCAGCTATTGGGTGAAATCCATCAGTGCTACCTGGAACAAAGGGATCAGTTACTCAGTCCCAGCATAACATCCACCATTACAGACCTGACCACCCAGAACAATAAGGACCACTGTGCACTGgtgCGCAGTGGCTGTGCCTTCATGGCCCATGTGTGTCAGGATgaacaccagctctacaatgagTTCTTCTCCAAACCAACTGCCAAGCTTGATGAGCTGCTGGAGAAGCTGTGCCTGTCCCTGTACGACGTGCTCAGACCGCTCATCATCCACTTCATCCACCTGGAGACGCTGTCCGAGCTCTGTGGGATCCTCAAGAACGAGATGATCGAGGACCATGTGCAAAACAACGTGGAACAGCTGGGGGCCTTTGAAGGCGTGATCAAGCAGATGCTGGAGGACGTACAAGAGAGGCTGATGTACAGAACGCACATCTACATCCAGTCTGACATCATCGGCTACAATCCTGCTCCGGGAGACCTGGCCTACCCTGAAAAGCTGGAAATGATGGAGaaaattGCTCAGAGCTTAAAGGAAGAGCAGAAGAAGCTTTCTTTAGATTCGTCATTTTCAGATGTACAGCTGGAGGATGCCGACTCAAAAAATGTGATAAAATCAGGTACCCCAGATGCCCCGGCAGCGCGGCCCCACGCCTCCATCTCCCCTGCCGACCTGCATGGCATGTGGTACCCCACTGTGAGGAGGACGCTGGTCTGCCTCTCCAAGCTGTACCGCTGTATAGACAGAAGGGTTTTTCAAGGTTTATCACAAGAGGCTTTATCCGCATGTATCCAGTCCTTACTGAAAGCTACAGACGCCATTGTGAAAAACAAGACACAGATTGACGGTCAGCTGTTTCTTATCAAACATCTCCTGATCTTGAGGGAACAGATCGCTCCCTTCCACACGGACTTCGCCATTAAGGAGATTTCTCTGGATCTCAAAAAAACTAGAGatGCTGCTTTTAAAATTTTGAATCCCAAGACTGTTCCTAATTTCTTTCGTCTGAACAGTCACAATGCTATCCTTGAGTTTCTATTAGAGGGAACCCCAGAGATAAAGGAGCATTATATAGACTCCAAGAAAGACGTCGATCGCCACCTGAAGTCCAGTTGTGAGCAGTTCATCCAGCAGCAGACCACACTGTTTGTGGGGAACCTGGAGGAATTTCTGACGAAGGTGGCAGCGCTGAAAACCATGGCCAGTCAAGGGGGCCCAAAGTACAACCTCGCTCAACAGCCATGGGCACAGCCAGCGAAGATCAATGACATCGTGACCGCGACCTACAGAACTATGAAAACGAAGCTGCCGATGACTATGCAGAGCTTATCTTTGTACCTGGCCAACCGCGACACAGAGTTCATCCTGTTCAAACCAGTCAGGAACAATATTCAACAAGTGTTCCAGAAGCTCCATGCACTCATACAGGAGCAATACAGCGGAGAGGACCTCCAGATCATAGCCTGCCCTTCTATGGAACAGATCAACTTACTACTGTCTGTGAATAAATAG

Function

GO: NA

KEGG:

id description
K20290 COG3, SEC34; conserved oligomeric Golgi complex subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89148 lncRNA upstream 14651 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA upstream 14651 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA upstream 14651 19218317 ~ 19222919 (+) False G71283
TU89082 lncRNA upstream 189398 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 335409 18901225 ~ 18902161 (+) True G71183
TU89246 lncRNA downstream 672295 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 934007 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 1671961 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 2058983 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2866976 22119583 ~ 22122533 (+) True G71452
AMCG00014610 mRNA upstream 781 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014612 mRNA upstream 21237 19214276 ~ 19216333 (+) True AMCG00014612
AMCG00014613 mRNA upstream 40731 19193419 ~ 19196839 (+) True AMCG00014613
AMCG00014607 mRNA upstream 46617 19184279 ~ 19190953 (+) True AMCG00014607
AMCG00014599 mRNA upstream 181107 19048293 ~ 19056463 (+) True AMCG00014599
AMCG00014609 mRNA downstream 32726 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014606 mRNA downstream 43809 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014611 mRNA downstream 67262 19319869 ~ 19330918 (+) True AMCG00014611
AMCG00014605 mRNA downstream 127824 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014617 mRNA downstream 590545 19843152 ~ 19844042 (+) True AMCG00014617
TU88725 other upstream 963210 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1789117 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2768457 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3104768 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3557782 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3602735 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8582896 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8616096 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9049766 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10598843 29851450 ~ 29851821 (+) True G72605

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000349_00015766_00028701.mRNA False 2437 mRNA 0.47 15 CI01000349 15032 ~ 28701 (-)