RNA id: AMCG00014609


Basic Information

Item Value
RNA id AMCG00014609
length 2654
RNA type mRNA
GC content 0.40
exon number 6
gene id AMCG00014609
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19285333 ~ 19291750 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGCAACAGAGCTGTGATTGATCTCCCAGCCCTCCAGAGATAAAGTCTTGGTCTAACATGATGATTCGACCTCAGTAGGAGTAGTTTTGATCTCAGACAAGACACGCATCATCCGCACATCATGCCACTGAAGGACTCTGGGCACCCACCAGCCATGTCCTCCTGAGCATTTCATATCCGCTAAGGTTCTTTCTGGAATTAAAACCACATCCCGAAAAACAGAGATTGCAATCTGCTCCCATTCGTGCAGAACACACAAGCAGCTGTTCTGAAGATGGCAAAGATACGGCTTATGACGTCCCTGCTCTTGCTGGTGCTGGTCGAGCCCCTGACGCTGCCAGTCTCTGCCCAGAACCTGGATCCGACACCGAAACCCCAAGGCGGCAGGCATGCTCTCAGTATCAACATCTCCAATGCGCTGCCTGCTCACAACCATCCCAAAACCATGAAGCCGGGCGGTCCCAGGCAGTTGCCGCCAATGTGTTCAGGACCCACTGAAATCAGGGATACTTTTAAGTACATTAACACGGTGGTCTCCTGCCTGGTGTTTGTGGTGGGGATCATCGGCAACTCCACCTTGCTGAGGATcatctacaaaaataaatgcatgagaAACGGACCGAACATCCTCATCGCCAGTCTCGCATTGGGAGATCTGTTGCATATTGTGATTGATATACCTATAAACGTGTACAagTTTTATAAGTCTGCGAAAGACTGGTGGCTGTTCAGCTTCTACTTCTGCATGCCCCTAGCGTGTACAGCCATTTTCTACACGCTCATGACATGTGAGATGCTGAGAAAGAAAAACGGAATGCAGATCGCTTTAAATGATCACCTTAAACAGAGGCGTGAAGTGGCAAAGACAGTTTTCTGTTTGGTACTTGTATTCGCTCTTTGCTGGCTACCCCTGCACGTCAGCAGAATCTTGAAGTTAACCATTTATGACGAAGAGGACCCTAATCGGTGTGAATTACTGAGCTTCTTCCTTGTTCTGGATTATATTGGCATCAACATGGCTTCCGTAAATTCTTGTATCAATCCCATTGCACTCTACTTGGTCAGCAAGAGATTCAAAAACTGTTTCAGGTCGTGCCTGTGCTGCTGGTGCACATCCCCAGACATGCTGGCCCTGGATGACAAGCAATCCTGCATGAAGTCAAAAGTCAACGACCGCGCCTCTGAACAGAGCAACTCCCGCCCCACAAACAAATACACCTCCACCTGAAGCTGCTTGTTCACAAAACACTGATTTCAGCTGGACTTCTCTCAGCTGACtaaaaaattatttttttatcatcacAAGTATGTTTTCTCCCACCTGGGAAACCATGTGTGAAGGCACTTAAGACAGtgactgttttaattttttatgactgtttttgtaaagaaacttcatttgcatttcatatcTGTTAAATGCACTCTGATCGGGCACCCCATAGAAATAGGTGCTTTCTCTGGGAAAGGAATTTGGAGCCTTATTAAGAATTAATGTTGCGTTAAGGCCTCTCTTATGAATATTTCAAAGCTAGATGAATCAGAGATGGTAGCCAATTTGCAAGAAAAGATCGCTAACATGTTTGACAAACTCTCATTtcagattaatacaaattattacatCATCAATCAATGAAAAGCTATGGGTCTTAAGGGTCACATTTTTATTACTGAATATAACTTccaacacaatatttaaatattgtgctgTTGACCAATTCATTTCAATGCGCTTCAGCtgccttcattttcatttccttgTTATTCTACGTTGCCCCCAGTCTAGGAAATCATGGATATGTTTCAGACTGTCCTGGTAAAAGCTCATTAACAAATCTGTTGCAGAAAGACTAAATAGGAGCTTTATCTGAGTAACAAGTTCcccattttaattacaatgaaCTGACTTTAATAATAGTAAACTTGCTTTGTTATGTAGCATCTGGGTAACTCCTTATATACAGAGCACAGCACGAGCTACAACTGTATAAGGAAGACTCAGCCTTGTTCCATTATTAACAGCCACActgtttttacatacattttctttaaacaaagtgTTAAAGAAAACTTAATGGGCAGGTCCCATGgttaagatgttttatgtttctaaataataaaaaaatatatcacaaaaaaacagaacaaagaaatTATAACTTGCCTGGCGCAATGTTTGTATTATACTGTTTTTTATGTTACTTATGCCTTATGATGTGAATCAAGCTTAATTTTGTAACctaaaaaatatcagaaaacgTGCTGAGCAATAACTGCTTTGTTATGTTCATGATACTGCATTCATGTCGATTCACATTTTAATAGCTATAATAGTTTTACTACTGTCAATCGGTGGGCTTTGAGTAGCTTAGTGTGGACAATGACAATCACTGCATTCAGCTTGATTTTCAGCTCAATCAAGAGCTACACatgtatcaatattttattgcatgaaGTGCCAGTATTTAATAGCTTTCAATATTATGAAACACTGTATTATATTAGCTATGTAAGCATTACTGTACATATTGTGCATACCTTTGTGCATTCataaaaacagatgtttgttttttatacatatataatttagtaaatttgttttttattatacatttatttgtatggcTTATCACTGAAGGATTATAGTACTGTTG

Function

GO:

id name namespace
GO:0086100 endothelin receptor signaling pathway biological_process
GO:0048484 enteric nervous system development biological_process
GO:0008217 regulation of blood pressure biological_process
GO:0042310 vasoconstriction biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004962 endothelin receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89148 lncRNA upstream 62414 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA upstream 62414 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA upstream 62414 19218317 ~ 19222919 (+) False G71283
TU89082 lncRNA upstream 237161 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 383172 18901225 ~ 18902161 (+) True G71183
TU89246 lncRNA downstream 633152 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 894864 20186614 ~ 20186966 (+) True G71378
TU89305 lncRNA downstream 1632818 20924568 ~ 20924837 (+) True G71414
TU89315 lncRNA downstream 2019840 21311590 ~ 21312022 (+) True G71424
TU89346 lncRNA downstream 2827833 22119583 ~ 22122533 (+) True G71452
AMCG00014608 mRNA upstream 32726 19237570 ~ 19252607 (+) True AMCG00014608
AMCG00014610 mRNA upstream 48544 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014612 mRNA upstream 69000 19214276 ~ 19216333 (+) True AMCG00014612
AMCG00014613 mRNA upstream 88494 19193419 ~ 19196839 (+) True AMCG00014613
AMCG00014607 mRNA upstream 94380 19184279 ~ 19190953 (+) True AMCG00014607
AMCG00014606 mRNA downstream 4666 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014611 mRNA downstream 28119 19319869 ~ 19330918 (+) True AMCG00014611
AMCG00014605 mRNA downstream 88681 19380431 ~ 19384319 (+) True AMCG00014605
AMCG00014617 mRNA downstream 551402 19843152 ~ 19844042 (+) True AMCG00014617
AMCG00014618 mRNA downstream 667839 19959589 ~ 20021694 (+) True AMCG00014618
TU88725 other upstream 1010973 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1836880 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2816220 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3152531 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3605545 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3563592 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8543753 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8576953 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9010623 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10559700 29851450 ~ 29851821 (+) True G72605

Expression Profile