RNA id: AMCG00014612


Basic Information

Item Value
RNA id AMCG00014612
length 378
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00014612
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19214276 ~ 19216333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGTTGAAAAGGCTACAGATTGAAGAATCATCTAAACCTGTCCGCCTGTCACAACAGCTGGATAAGGCAGTCACGACCAACTACAAACCGGTGTCAAATCACACTTACAACGTGGAGTACgataagaagaagaaggaggaaggGAAGCGAGCTCGGGCCGACAAGCAGCAGGTCCTGGATATGCTCTTCTCGGCCTTTGAGAAGCATCAGTACTACAACATCAAGGATCTGGTGGACATCACCAAACAACCTGTGATTTACCTGAAAGAGATTCTGCGTGAGATTGGGATCTACAATGTGAAAGGCACCCACAAAAACACGTGGGAGCTCAAGCCAGAGTACAGACACTACCAGGGCGAGGAGAAGAGTGACTAG

Function

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005674 transcription factor TFIIF complex cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K03139 TFIIF2, GTF2F2, TFG2; transcription initiation factor TFIIF subunit beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89082 lncRNA upstream 166104 19047958 ~ 19048172 (+) True G71237
TU89012 lncRNA upstream 312115 18901225 ~ 18902161 (+) True G71183
TU88954 lncRNA upstream 521643 18688548 ~ 18692633 (+) True G71136
TU88779 lncRNA upstream 736248 18477043 ~ 18478028 (+) True G71038
TU88777 lncRNA upstream 745941 18465219 ~ 18468335 (+) True G71036
TU89148 lncRNA downstream 1984 19218317 ~ 19222919 (+) True G71283
TU89156 lncRNA downstream 1984 19218317 ~ 19222919 (+) False G71283
TU89157 lncRNA downstream 1984 19218317 ~ 19222919 (+) False G71283
TU89246 lncRNA downstream 708569 19924902 ~ 19925198 (+) True G71362
TU89263 lncRNA downstream 970281 20186614 ~ 20186966 (+) True G71378
AMCG00014613 mRNA upstream 17437 19193419 ~ 19196839 (+) True AMCG00014613
AMCG00014607 mRNA upstream 23323 19184279 ~ 19190953 (+) True AMCG00014607
AMCG00014599 mRNA upstream 157813 19048293 ~ 19056463 (+) True AMCG00014599
AMCG00014598 mRNA upstream 166635 19045683 ~ 19047641 (+) True AMCG00014598
AMCG00014595 mRNA upstream 251233 18949313 ~ 18963043 (+) True AMCG00014595
AMCG00014610 mRNA downstream 7448 19223781 ~ 19236789 (+) True AMCG00014610
AMCG00014608 mRNA downstream 21237 19237570 ~ 19252607 (+) True AMCG00014608
AMCG00014609 mRNA downstream 69000 19285333 ~ 19291750 (+) True AMCG00014609
AMCG00014606 mRNA downstream 80083 19296416 ~ 19317255 (+) True AMCG00014606
AMCG00014611 mRNA downstream 103536 19319869 ~ 19330918 (+) True AMCG00014611
TU88725 other upstream 939916 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 1765823 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 2745163 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 3081474 16129525 ~ 16132802 (+) False AMCG00014508
TU88058 other upstream 3534488 15675631 ~ 15679788 (+) False AMCG00014490
TU89430 other downstream 3639009 22855342 ~ 22855646 (+) True G71525
TU90165 other downstream 8619170 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 8652370 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 9086040 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 10635117 29851450 ~ 29851821 (+) True G72605

Expression Profile