RNA id: AMCG00014616


Basic Information

Item Value
RNA id AMCG00014616
length 1644
RNA type mRNA
GC content 0.43
exon number 3
gene id AMCG00014616
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19386615 ~ 19390852 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTAAAACTCAAAGGTATTCTACATTTGAAGAAGATGTTTTTGGCACCGAGATCGGAAATCTGGCATCTGATTTGAACATTGACCCAAAGGATGATGCTCAGACAAGCTTCCGCTTCATTCAAGAACCaaacaagtattttaatatGAGACAGACGGATGGGTATCTAACAGTGGGGGAGAGGATTGACAGGGAGCAGCTCTGCGGTCAGACTCCCCATTGTCTCCTCACGTTTGACATCGTCACCTTCCACAAAGAGACTTGTCACCTGATACACGTGGATATTGAAGTGAAGGATGTCAATGACCATTCACCGACCTtcacacaaaatgaaatctATCTGCAGATATATGAAAGTGCGGTGGAAGGGACACGATTTCCTTTGGACATTGCCGTTGACCAGGATCCGGTGTATGAAGCCTCAATTGCTGAGAACAGTGTTGCAGGGACGCGTATTACTACTGTGGAAGCCCGTGATCTTGATCTGGGGGACAATGGCAAAGTGTCTTACAAACTCATGGACGGAGAAGGACACCAGCAGTCTCCAGTGTCTAACATGGTGTCAGTAGACCCAGTCTCTGGATCTGTAATGTCTAGCAAGTCGTTTGATTATGAACACACGAAACAATTTGAAGTGGCAATCCAAGCAAGTGACGGGGGGTTTCCAAAGATGTCCAGAACAGCGTTGATCAGAGTTAAAATACTTGACACAAATGACAATTCGCCTTTTATTACACATCCCGTTTTATTAAATGGGTCTGCCTCTGTGTTTGTACCTCGTAATGCACCGCTTGAATCCCCTGTCCTTCACATTGCTGCAAAAGATGACGACGAAGGGTTGAACGCCGAGCTGTCATATAACATTGTAGATGATCCGCAAATTATGTTCTCCATAAACAATCAAACTGGTGAACTTTATCTGAGGAAGCGACTAATACACATATCTGGAGACATTCTTCAAGTCCACATATGTGTTAAAGATAGCGGAAACCCTTCGCTGTCCACCAACGCTGTCTTTAAATTCATTGTAACAGAAGTGTTTCCATCGGATGATGAAGAAACTGAACTTCCAAAATCTTTCAAGGTGGAACAATCCGATTTAATAATTTCAGTCCTTTTGCTCTGTGGGGTTTGTGGTTTGTTGCTGGTTACTACTCTTATGGTTGGAGTCACCTATCACAACACAAGAAAACGAGGATACTATGATACGAAGAAGATAATGAACCGAAATGTTGGCGAAGGACATTTACTGGAAGTGAACAGTTTAACCAGAGATGCGAAAGCAGAGCAACCAAACGAATCCAGCTCTTCTGATGATGAACCAGTCTACACTTTAGAAAATGCAAACTATACTCTGAAGACTACGCCTAGCAACCTCGTCTTTGATAACTGTGGAGCCACATACCATGAACAAACGCATCATGAACTATCAGCCAACACAAAACATATTCTGCCTGTAAGAAGAAAGTCTCTGTTTTGCACCAGCATCCCCAAAACTAAAGGGTTGCTGCAGGCGATTCCAAGAACAGGAACACTATCGACTCATGTCTGTCACAGTAACCACTGTAAAGTGAAGTGCACTGATGTGATTGAAGTAAAACAGCAGCTACCTTCAGCATTATCAGAGATCTCGACTTGTTTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89190 lncRNA downstream 130681 19252574 ~ 19255934 (-) True G71315
TU89167 lncRNA downstream 168487 19217904 ~ 19218128 (-) False AMCG00014603
TU89166 lncRNA downstream 169578 19216213 ~ 19217037 (-) True G71292
TU89165 lncRNA downstream 171369 19214614 ~ 19215246 (-) True G71291
TU89164 lncRNA downstream 172211 19212644 ~ 19214404 (-) True G71290
TU89243 lncRNA upstream 401947 19792799 ~ 19880231 (-) True G71360
TU89256 lncRNA upstream 682173 20073025 ~ 20078009 (-) True G71371
TU89264 lncRNA upstream 795777 20186629 ~ 20186968 (-) True G71379
TU89345 lncRNA upstream 2607070 21997922 ~ 21998188 (-) True G71451
TU89356 lncRNA upstream 2830218 22221070 ~ 22221467 (-) True G71461
AMCG00014614 mRNA downstream 40945 19342131 ~ 19345670 (-) True AMCG00014614
AMCG00014615 mRNA downstream 47955 19330888 ~ 19338660 (-) True AMCG00014615
AMCG00014603 mRNA downstream 161385 19217722 ~ 19225230 (-) True AMCG00014603
AMCG00014604 mRNA downstream 183048 19202812 ~ 19203567 (-) False AMCG00014604
AMCG00014600 mRNA downstream 202422 19174682 ~ 19184193 (-) True AMCG00014600
AMCG00014623 mRNA upstream 968294 20359146 ~ 20401033 (-) True AMCG00014623
AMCG00014621 mRNA upstream 1061332 20452184 ~ 20458681 (-) True AMCG00014621
AMCG00014620 mRNA upstream 1085497 20476349 ~ 20479063 (-) True AMCG00014620
AMCG00014622 mRNA upstream 1310972 20701824 ~ 20708613 (-) True AMCG00014622
AMCG00014625 mRNA upstream 1905162 21296014 ~ 21312988 (-) True AMCG00014625
TU87063 other downstream 7724122 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 8588468 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 10069448 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 11002391 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 11228025 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 8938887 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 9998438 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 12872315 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 13206610 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 13206610 32597462 ~ 32619149 (-) False G73127

Expression Profile