RNA id: AMCG00014638


Basic Information

Item Value
RNA id AMCG00014638
length 564
RNA type mRNA
GC content 0.50
exon number 4
gene id AMCG00014638
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 24888533 ~ 24897009 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgttaattgctCCTATTGTCTGCCAGCGGGGTGTGTGGTGCATCAAGGTGATTGACATTAAAGAGAAACTGAAGCATTCAAAGAAGTTCTGGTCCACTATACCCGACAGCATCTGTTCGGGTGACAAAGTGACCGCTGGCAAGTCGAACGAGGATGAGTGCTGGAATGGCCACACAAAGGGGAGGTATTCTCCTGAAGTTTTAAACAATGGACTGACAAACCAGATAAACAACCCCGAAGTTGAGGTGGACATCACAAGACCAGACACCTTCATTCGTCAGCAGATCATGACACTCAGAGTAATGACAAATAAGCTGAGAAATGCATATAATGGGAATGATGTCAATTTCCAGGACACGAGCGACGAAGGCAGCGGTTCGGGAAGTGGCAGCGGCTGCACTGAGGCCTGTGTCACCGAGTTCGATTTCATCAGCACGGAGGCTCCCGCTGTCGGCGCAGACAGAAGTGAAGACAAAGCTTCGGCCGTCAAGCCGAGTTACTCTCTAGTACTGACCTTCGTCCTGACCTGCACGTTCTTTGCACTTCAGAGGCAGTGGAGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89508 lncRNA upstream 355572 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 555236 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 979884 23908385 ~ 23908649 (+) True G71584
TU89490 lncRNA upstream 1183099 23705163 ~ 23705434 (+) True G71581
TU89482 lncRNA upstream 1291210 23597118 ~ 23597323 (+) True G71574
TU89583 lncRNA downstream 185650 25082659 ~ 25082878 (+) True G71662
TU89593 lncRNA downstream 212147 25109156 ~ 25109378 (+) True G71670
TU89672 lncRNA downstream 636333 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 808449 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 848794 25745803 ~ 25748408 (+) True G71772
AMCG00014636 mRNA upstream 129236 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014635 mRNA upstream 502718 24382767 ~ 24385815 (+) True AMCG00014635
AMCG00014632 mRNA upstream 2624533 22247781 ~ 22264000 (+) True AMCG00014632
AMCG00014624 mRNA upstream 4221353 20646339 ~ 20667180 (+) True AMCG00014624
AMCG00014619 mRNA upstream 4815463 20024521 ~ 20073070 (+) True AMCG00014619
AMCG00014637 mRNA downstream 31022 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014643 mRNA downstream 190005 25087014 ~ 25102638 (+) True AMCG00014643
AMCG00014646 mRNA downstream 227085 25124094 ~ 25126045 (+) True AMCG00014646
AMCG00014644 mRNA downstream 252794 25149803 ~ 25163635 (+) True AMCG00014644
AMCG00014648 mRNA downstream 348404 25245413 ~ 25245961 (+) True AMCG00014648
TU89430 other upstream 2032887 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 6614173 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 7440080 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 8419420 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 8755731 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2938494 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2971694 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 3405364 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4954441 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5867342 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_00862803_00911972.mRNA True 612 mRNA 0.52 4 CI01000299 862803 ~ 911972 (+)