RNA id: AMCG00014644


Basic Information

Item Value
RNA id AMCG00014644
length 1431
RNA type mRNA
GC content 0.47
exon number 11
gene id AMCG00014644
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25149803 ~ 25163635 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGCAGTGTGGGAAGAATGCAGAAATGGAGAATCACCTGGAAATGGGAAAGAAATTGCTGGCTGCTGGACAGTTGGCAGATGCTCTGTCTCACTTTCATGCTGCTATAGATGGAGACCCCAAAAACTACATGGCTTATTACCGAAGAGCCACGGTTTATTTGGCTATGGGGAAATTCAAATCGGCACTGCCAGATCTCAGTAAAGTAATCGAAATAAAACCAGATTTCACCTCTGCAAGGCTGCAGAGAGGGAACCTGCTCCTGAAGCAAGGGAAACTAGATGAAGCGGAGAGAGACTTTAAGACCGTGCTCAAGTCCAATCCAATTGACAAAGAGGAGAAAGAAGCCAAGAGCCAGCTGATCAAATGTGATGAAATGCAGCGACTTGTGGCCCAAGCAAAGAGCGACTATCAGAGGAGGGATTACAGTGCAGCAGCTGCCCACCTTGATACACTCCTAGAGACTTGTGCTTGGGATTTCGGTTTACGGGAACTCCGAGCCGAGTGCTTCATCGAGATGGGAGAGATGGGGAAAGCGATCAGTGACCTTAAAGCTGCATCTAAACTGAAGAGTGACAACACTGAGGCCTTTTATAAGCTCAGCAACATTTACTACAACTTGGGAGATCATGAGATGTCACTGAATGAGATTAGGGAATGTCTGAAATTGGACCCAGACCACAAGCAGTGCTTCAGTCACTACAAACTGGTGAAGAAGCTCAACAAACAGATCACAGCTGCAGAGGAACTCATCCAGGAAGAAAGGTATGGAgatgctgtaaataaatatgaatcgGTTATGAAGACTGAAGCCAATGTGCCATATTACACACTTCAGGCCAAAGGAAGAATATGCCATTGTTTGTCTAAGAACCAGCAAGCGACTGAAGCCATTGCAGTCTGCAGTGAAGTCTTGAAGACGGAGCCTGAAAGTCTAAATGCCTTAAAAGACCGAGCTGAGGCTTACCTACAGGACGAACAGTATGAAGCAGCTGTTAAAGACTTTGAAACGGCCCGTGAGCACAATGAGAACGATCGGGAGATCAATGAAGGACTGGAGAGGGCACAGAGACTCCTTAAGCAGTCCCAGAAGAGAGACTACTACAAAATACTTGGCGTGAAGAGGAATGCCCAGAAAAAGGAAATCATTAAAGCGTACAGGAAGCTGGCACATCAGTGGCACCCAGACAACTTCCAAGATGAAACGGAAAAGAAAAACGCAGAGAAGAAATTCATTGATATTGCTTCTGCCAAAGAGGTTCTTGTGGATCCAGAAATGAGGAGGAAGTTCGATGCAGGGGAGGATCCACTGGACCCAGAGAACCAGCAGGGCGGGGGTGGGCCCAACTTCCAGAGAGGCTGGAACACCTGGCAGGGATTCAACCCCTTCGGCTCGGGACCCTTTAACTTCAAATTCAACTTCAACAACTAG

Function

GO: NA

KEGG:

id description
K09523 DNAJC3; DnaJ homolog subfamily C member 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89593 lncRNA upstream 40425 25109156 ~ 25109378 (+) True G71670
TU89583 lncRNA upstream 66925 25082659 ~ 25082878 (+) True G71662
TU89508 lncRNA upstream 616842 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 816506 24332431 ~ 24333297 (+) True G71596
TU89493 lncRNA upstream 1241154 23908385 ~ 23908649 (+) True G71584
TU89672 lncRNA downstream 369707 25533342 ~ 25534154 (+) True G71725
TU89720 lncRNA downstream 541823 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 582168 25745803 ~ 25748408 (+) True G71772
TU89742 lncRNA downstream 606574 25770209 ~ 25770489 (+) True G71784
TU89783 lncRNA downstream 788598 25952233 ~ 25959702 (+) True G71817
AMCG00014646 mRNA upstream 23758 25124094 ~ 25126045 (+) True AMCG00014646
AMCG00014643 mRNA upstream 47165 25087014 ~ 25102638 (+) True AMCG00014643
AMCG00014637 mRNA upstream 211838 24928031 ~ 24937965 (+) True AMCG00014637
AMCG00014638 mRNA upstream 252794 24888533 ~ 24897009 (+) True AMCG00014638
AMCG00014636 mRNA upstream 390506 24692286 ~ 24759297 (+) True AMCG00014636
AMCG00014648 mRNA downstream 81778 25245413 ~ 25245961 (+) True AMCG00014648
AMCG00014649 mRNA downstream 209751 25373386 ~ 25374072 (+) True AMCG00014649
AMCG00014651 mRNA downstream 316156 25479791 ~ 25505003 (+) True AMCG00014651
AMCG00014653 mRNA downstream 358591 25522226 ~ 25530849 (+) True AMCG00014653
AMCG00014652 mRNA downstream 401522 25565157 ~ 25574008 (+) True AMCG00014652
TU89430 other upstream 2294157 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 6875443 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 7701350 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 8680690 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9017001 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2671868 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2705068 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 3138738 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4687815 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5600716 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile