RNA id: AMCG00014655


Basic Information

Item Value
RNA id AMCG00014655
length 5089
RNA type mRNA
GC content 0.49
exon number 23
gene id AMCG00014655
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25660345 ~ 25698928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAAAGGGCCCCAGGAAAGATCCTGTTTGACCTCGTGTGCACCCACCTGAATCTCATCGAGGGAGACTATTTTGGCCTCGAATACCAAGACCACCGGAAAATGACGGTGTGGCTGGACCTACTAAAACCCATCATGAAGCAACTCAGAAGACCCAAGCACACAGTCCTGAGATTTGTGGTGAAGTTCTTCCCCCCAGACCATGCCCAGCTGCTGGAGGAATTAACAAGGTACCTCTTTGCCTTGCAAATTAAGCAGGATCTGGCTGCAGGTCGACTAACTTGCAATGATAGCAGTGCTGCCCTACTGGTGTCCCACATTGTTCAGTCCGAGATCGGAGATTTTGATGAAGCCCAGAACCGGCAGCACCTCCGGAAAAACAAGTACATTCCAGATCAAGACATACTGGTGGACAAGATCAATGAGTTTCATCGAAAGCACGTTGGGCAGACACCGGCAGAGTCCGACTACCAGCTGCTGGAGATTGCGCGGCGGCTGGAGATGTATGGCATCAGGCTTCACCCAGCCAAGGACCGAGAAGGAACTAAGCTCAACCTTTCTGTggcccacacaggaatcctggTTTTTCAGCAAAGCAACTACCAGGACACCCTTGAGTTTCTGATGGGCAGCCGTGACTGCTGCAAGGTCTTCTGGAAGATCTGTGTTGAGTACCATGCCTTCTTCAGGCTGTTTGAAGAGCCCAAGCCCAAACCCAAGCCAGTCCTCTTCAGCAGAGGGTCCTCTTTCAGATTCAGtGGCCGGACACAGAAACAGGTGATTGATTACGTCCGAGACTCGGAATTCAAGAAGATTCCCTTTGAGAGGAAACACAGTAAGATCCAGTCCAACTTGAGCCTGTCTCCTCAGCCCTCAGAGCGCCGTCCCGAAGTGCCAAAGCAACCCGACTCCCCAGCCAAGACATCGAGGCTGCCCAAGGACACAGGGTTTGTGGAGGACACGGCAGGACAGCAGCCGCACCACACCCCCTCATCCCGGAGGAGCCCCCGTGAGGGCCAGAGCGCCGAGCAGGCAGAGGAGGAACCAGATGCAGTCGGCCAGGGGAAAGGCCAGCAGCTGTCGGGCAAACGGCAATCGGAGCATCTGAGCACAGGTCCAGCATCCCGGGCTGCTAGGGGCAGCAGCAACTCCATACCTTACATAGACTGCAGTGACATAGATAGCGAGTATGACGTGGCGAAGGGCCGTGTCACCAGGTCCCAGTCCCAAACAAATGACAACTATGAGGATGAACCGGTGGTCCGCAGTAGTGGCGGTAACGGTGCCAACCCTCGTGAATGTCAGGAGAATCGCAGCAGAGGCAGATATAGGGATCCCCCTACCTTTTCCAGGCCTTCACTCAATTTAACTGAAGAGTTTATTGACGATGAGCCCGACGACTTTTCATTTTACGGCAGCGGGACCCCACGCATGCCGAGACACAGCACTCTAGTCGATGAGATTTTCAGGGGCTCGGAAAACCGTAGCCCCCTGCCTGCTCCCCACACTCCTGGGAGCAAGACTTCCAGCCCGCACATGAGCAGTTTTAATAGGACCGGCTCTCCGAGTTATCTAGAGCAAAACGGTCACGGCTCCAGGCCTTCACTTCGGGAAGATGGCCCACTTTTTAGTTCGAGGCCCAGCCCCCGGGAGGAATGCCAAACGTATGGTAACTGCTCTCCCATTGTAGGTAGGCCACACCTGCAAAAAATGCAGAACGTGAGAAACCGCTCCGACACAGACCCTTTCATCCTCAGTCAGGTCACCTCCACTCCCACAAACGACCACAGGTCGGGGAGCGTTTCCAAAGCAGAGCGCATGGCTGCTTTGGAAAGGCGGATGATTGGCAATGGCCTGTCTTCCCCTGGCCTGCCCAAGATGAGCCCTGCCATGCAGAAGCTGTTTAGCGGCGGCGCAGCGGATCACATGGGAGCCGTTCAAATGATCGACGGCTCGACCAGCAGTGGCACGGAATCCAGCGACTCGGAGTCCGAAATACTCAACCCTTACAACCACCCACTCATGTATGGTAACCCCATTGCCGTGAACTCGTCGCCCATGCCTAGAAACAAGTATTCCTTCGGCAGCCTGCAGTTAGATGAGGAGATAGAGGAAGATGGGTGTTTTAACCTGAGTGATGAAGATGgCTCCATGACTAACAGCCCCCGGCTCTCGGAGACCTCGATGAACTCCCAGGGGACGCTGGCGACTCAGAAGCAGATCCTGTCCCCCGGCCTGAGCCCCGACGCCCGGCAGCCTTCCCCCCTCACCAGTCCCCTGCTGAACGACGCAGGCTGTGTGCGCACCGACGATGAGGATGAAGTCAGGAGGAAGAGGTTCCCCACAGACAAGGCTTATTTCATTGCCAAGGAACTGCTGACTACGGAGAGGACGTATTTGAAGGACCTCGAGGTGATAACCATGTCATTCCAAAACGCCATAGGTAAAGATGAGGCGATGCCCGAATCTCTCAGGAATGTTATCTTCTCCAACTTTGACCCTCTCTATAAATTTCACACCGGCTTCCTGAAAGAAGTGGAACAGAGACTTGCTCTCTGggAGGGCCGCTCAAATGCACACATCAAAGGCGATTACCAAAGGATCGGGGATGTAATGCTGAAGAACATACAGGGTATAAAGCAGCTGACGTCCCACCTGCAGAAACACTCGGAGgtgctgctggagctggagagGGCCAGCCGGGCCTCGCGCAAGCTCGAGGTCCTGTGCCGGGACTTTGAGATGCAGAAGGTGTGCTACCTCCCCCTCAACATCTTCTTCCTGCGGCCCCTACACCGCCTCATGCACTACAAGCAGATCCTGGAGCGCCTCTGCAAAcactacccccccacccacgTGGACTTCAGAGACTCCAGAGCTGCTCTGGCGGATATTTCCGAAATGGCAGCGCAGCTCCACGGAACCATGATAAAGATGGAGAATTTCCAAAAGCTGCTTGAACTGAAGAAAGACTTAATTGGCATAGAGAATCTTGTGATTCCAGGACGGGAATTCATCAGGTTAGGCTGTCTTAGCAAGCTTTCGGGAAAAGGCCTGCAGCAGCGAATGTTTTTCTTGATCAGAGACAGCGAGGAAGAGTGGGGCGTGCCTCACTCCTTCACACTGTTCGGACAGCGGCAGACTGTGGTGGTCGCAGCGAGTTGTGCATCGGAAATGGAGAAGTGGATAGACGATATCAAGATGGCCATCGACCTGGCTGAGAAATGCAATGGGCCTTCCTCAGACTTGCTGGCCACTAGCCCTCCCGAAAACAAATCTCCAGAGGACTCGACTCTAGACCAGGAATCTGAGGATGATCTCAGTGCCTCCCGTACCTCCCTAGAGAGACAGGCCCCTCACCGTGGTAACACCACGGTTCATGTCTGCTGGCACAGAAACACCAGCGTTTCAATGATCGACTTTAGCATTGCTGTGGAGGATGACTATCCTCTGGCCAGTCTGCCACTCCTTGGGTACTCAGTCACCATTCCCTCAGGGTCTGAAAACATCCACAAGGATTACGTCTTCAAGCTGCACTTCAAATCCCACGTGTACTATTTCAGATCGGAGAGCGAGTACACATTTGAAAGGTGGATGGAAGTTATCCGGAGTGCCACAAGCTCAGCCAGCCGCGCTCGGATTTTAAACCGTAAGGATTCTCACCCTTACTGATCCAAAGACTCCCCCAACTCCAGGCCCACTGGATTTCAACTGCCCCCCATGCTGTGCCCATGCATATCCACACTGCCCGTCTGAGACCGCTGCAGCCTCCTGACAGCCAGCCATGAGCTCGATTACACGCCTCTCCTGCCTGCTTCTTTACTAGGGTATGATCTcggacagattttattttttttttcctctccagaCTCTTGTTTCTAAACACACGTGTAACAACACTTGCACCTCGAACTGTGAGTGTAACCTGCACAATTCATATCCTTCTGATGCTTTAAGGGTACCTCTCTGACttagagacaaaaaaaaaaaaaaaaaagaccacagTTTTAACACTGAGGCGTTAACTCCATTTTTAGTGggacttcatttttttttttttttacaagttttaaaaagtcTGTGAACCATTTGGTGACATGATTTTACACGTTGGTTTGTGTTTTCAAGATGTATGCCTATCAAAAGAGATGGgttcggtttgttttttaactaaaGTTTTCTTGCAAATTTCTTTGCTATtccaaaaagtttttttttttttttttaggaaaaagGACAAAGGCTGATTCAATTTTTGCAGCCTGAGTGCCAAACTGATTTATACCAATTTTCTCTGCCATTGTCTTTCAACCTTTATATATGTGATTTTAATAAGTCTTTGGTGATAAACATGTTTCTAACAGTGTCCATTTTAGAAAATCAGACTAAACCGGcacctttaaaaatgtttttaaatgtaattctataTGTCCCCTAGTAACTATGTATGACTTGATGAATGATCATGTTCACATTAACCTTAAGATgtcaatatatgtattaaaaaaaggtttttataATGATTACTCTAGGGGTAGTTCTCCATTTAATGAATAAGTCAAGGTAGACATTGTCACTTAAGGCGACGGAAATGGCTTCTTCATGTaactgctgtgtttctgtgaccTATACTGACTACAGTATATTAGCATCCagagtttattttgtatgatcaaattacaatttgtgaaaaactgaCATTGTTTTTATGAAGAATCTGACTTATATTAAAACTATATCTATGGtgataaaacatgtaattcaGATGAATATTCCCAAGTGGATTGAagctttaaatgaaaaatactaaatatacatttaaaaataaatctatatcaAACAATCCACTCCATGAATAGCAGGCCCTCTCACATGTCACAGCTGGCTTTCaactataataaaaacacatgaaactgaaataaaatgcatatctatggttttcttaaaaaatgtcatgacttttatataaaaaaagagcaTTTTAATCACATGCCATGGTAGATTAAGGGTTTTGCTCCAGCTGGGAGCTGCTGCCTCCCTCCAGTAGCAGAGTGCTCTATGGAAGTGAaagcaataaacacattttatg

Function

GO: NA

KEGG:

id description
K17477 FARP1; FERM, RhoGEF and pleckstrin domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89672 lncRNA upstream 126191 25533342 ~ 25534154 (+) True G71725
TU89593 lncRNA upstream 550967 25109156 ~ 25109378 (+) True G71670
TU89583 lncRNA upstream 577467 25082659 ~ 25082878 (+) True G71662
TU89508 lncRNA upstream 1127384 24523645 ~ 24532961 (+) True G71598
TU89505 lncRNA upstream 1327048 24332431 ~ 24333297 (+) True G71596
TU89720 lncRNA downstream 6530 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA downstream 46875 25745803 ~ 25748408 (+) True G71772
TU89742 lncRNA downstream 71281 25770209 ~ 25770489 (+) True G71784
TU89783 lncRNA downstream 253305 25952233 ~ 25959702 (+) True G71817
TU89798 lncRNA downstream 311871 26010799 ~ 26011000 (+) True G71826
AMCG00014657 mRNA upstream 29491 25608988 ~ 25630854 (+) True AMCG00014657
AMCG00014654 mRNA upstream 67778 25575240 ~ 25592567 (+) True AMCG00014654
AMCG00014652 mRNA upstream 86337 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014653 mRNA upstream 129496 25522226 ~ 25530849 (+) True AMCG00014653
AMCG00014651 mRNA upstream 155342 25479791 ~ 25505003 (+) True AMCG00014651
AMCG00014661 mRNA downstream 235553 25934481 ~ 25941543 (+) True AMCG00014661
AMCG00014660 mRNA downstream 337505 26036433 ~ 26052543 (+) True AMCG00014660
AMCG00014665 mRNA downstream 386931 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014664 mRNA downstream 469533 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014667 mRNA downstream 504955 26203883 ~ 26244458 (+) True AMCG00014667
TU89430 other upstream 2804699 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7385985 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8211892 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9191232 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9527543 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 2136575 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 2169775 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2603445 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 4152522 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 5065423 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000109 True 789 mRNA 0.53 8 NC_007112.7 2431956 ~ 2443772 (+)
grasscarp (Ctenopharyngodon idella) CI01000299_00419297_00444862.mRNA True 3534 mRNA 0.47 18 CI01000299 419297 ~ 445888 (+)