RNA id: AMCG00014679


Basic Information

Item Value
RNA id AMCG00014679
length 603
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00014679
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26681180 ~ 26698625 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCGGCGATTGCCAGCGGTTTGATCCGGCAGAAGAGACAGGCTCGGGAGCAGCATGCAGACCGGCCCTCCACCAATCGGAGGAGGAAAAGCCCCAGCAAGAACCGGGGTCTCTGCAATGGGAACCTGGTCGATATCTTCTCCAAAGTCCGAATCTTTGGCCTGAGGAAGAGGAGACTACGGAGACAAGTTCAGTTGTGGTTGATGCTAGCCAGTGCCAGTGTCAAGCAGGGGGTGCCCTCCCTCGCCAGACAGCTGCAGCAGAGCACAGGAATCCTGGTGGCAAACCAACAGCAACCTGCACTCCACCTCCTGCCCAAAAAAACAGCTCCAGCTCCTCTTTCCCTTTCTCCACCAGCCAAGGTCTCAGAGGAGATTCCTGCCAGCTCGAACAATCCCCAGCTCAAGGGTATAGTGACCAGGTTATATTGCAGGCAGGGATACTACTTGCAAATGCACCCAGATGGATCTCTTGATGGGACCAAGGATGACAGCACTTTGTTCAACCTCATACCAGTGGGCCTGAGAGTTGTTGCTATTCAGGCCGTGAAGACAGGGTTATACATAGCCATGAATGGAGAAGGTTATCTGTACACCTCA

Function

GO:

id name namespace
GO:0007399 nervous system development biological_process
GO:0005576 extracellular region cellular_component
GO:0008083 growth factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89858 lncRNA downstream 346180 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 356926 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 399215 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 412773 26267867 ~ 26268407 (-) True G71876
TU89851 lncRNA downstream 414964 26265731 ~ 26266216 (-) True G71875
TU89953 lncRNA upstream 233643 26932268 ~ 26932637 (-) True G71961
TU90016 lncRNA upstream 586795 27285420 ~ 27304597 (-) True AMCG00014693
TU90042 lncRNA upstream 637070 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 720191 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 831671 27530296 ~ 27530643 (-) True G72089
AMCG00014678 mRNA downstream 35248 26643240 ~ 26645932 (-) True AMCG00014678
AMCG00014672 mRNA downstream 141618 26522096 ~ 26539562 (-) True AMCG00014672
AMCG00014674 mRNA downstream 200902 26428681 ~ 26480278 (-) True AMCG00014674
AMCG00014673 mRNA downstream 252651 26404082 ~ 26428529 (-) True AMCG00014673
AMCG00014671 mRNA downstream 320189 26346500 ~ 26360991 (-) True AMCG00014671
AMCG00014686 mRNA upstream 203596 26902221 ~ 26904187 (-) True AMCG00014686
AMCG00014688 mRNA upstream 281496 26980121 ~ 27034019 (-) True AMCG00014688
AMCG00014689 mRNA upstream 480478 27179103 ~ 27189518 (-) True AMCG00014689
AMCG00014693 mRNA upstream 599826 27298451 ~ 27304500 (-) False AMCG00014693
AMCG00014692 mRNA upstream 639073 27337698 ~ 27369527 (-) True AMCG00014692
TU87063 other downstream 15018687 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 15883033 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17364013 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 18296956 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 18522590 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 1631114 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 2690665 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 5564542 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 5898837 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 5898837 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074463 True 747 mRNA 0.51 5 NC_007120.7 31838044 ~ 31915423 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_01743393_01795392.mRNA True 1091 mRNA 0.51 5 CI01000009 1743118 ~ 1795461 (-)