RNA id: AMCG00014691


Basic Information

Item Value
RNA id AMCG00014691
length 2730
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00014691
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27321614 ~ 27337656 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACCTCAGATTAGAGCCGTGTTTACTGGGAGTGCACGGGGAGAGTCAGCCGACAGAGGCTCTATGAGATCGGACATTATGAGGATGAAGGACATCTCTCTGCGGCAGGACCCTGACCTCCGGAAGGAGCTGGCGCTGCTGGCTCGGGGCTGCGATTTTGTTCTGCCGTCCCGCTTCAAGAAGAGACTGAAGGCTTTCCAACAAGTCCAGGCAGAAGAGCACAGCATCATTGATAATCCTTCAGTTCTCGAGCGGAAACCACAGCAGgCTCAGGTAAAGAAAGAAGAGCCCATAACACCAGCTTTAAGTGAAAGCATTCCCAAGTTTTTCTTCCCACGTGGACGGCCCAAAGCCAATCTCAACGTCGACACTCTCATTTCGAGGATCGAGAAGGCCTTTTCACAGTTCCCCAATGAGAGGGCCACTATTGAAGACATGGGGAAGGTAGCCAAAGCCTGCGAGTGTCCACTCTACTGGAAAGCCCCATTGTTCTGCGCTGCTGGTGGAGACAGAACAGGATTTGTGTCTGTTCACAAATTCATTGCAATGTGGAGAAAAACATTGCAGACCTGCCATGATGACGCATCTAAATTTGTTCACCTTTTGGCCAAGCCTGGCTGTAATTATCTGGAACAAGAGGACTTTATTCCATTCCTGCAGGATGTGGTCAACACACATACCGGACTCAGATTTCTAAGGGAGGCATCAGATTTCCACTCTCGTTACATTACAACAGTTATTCAGAggatatattataatgtaaaccGATCCTGGACGGGGAAAATTACCTGTTCAGAACTCAGGAAAAGCAGTTTTCTTCAGAATGTGGCGTtattggaggaggaggaggatgtcAACCAGCTCACAGAGTATTTCTCCTATGAGCATTTCTACGTCATCTACTGTAAATTCTGGGAACTGGACACTGACCACGATCTCTACATTGATCAGAAGGACCTGGCCCGACACAATGACCATGCAATCTCCCATAAAATGATCGAAAGAATATTCTCTGGAGCGGTTACcaggggcAGAAAATCACGTAAGGAAGGCAAAATGAGCTATGCAGATTTTGTATGGTTTCTGATTTCGGAAGAGGACAAGAAAACAGCCACCAGCATAGAGTACTGGTTCCGCTGCATGGACCTGGATGGAGACGGGGTGCTGTCCATGTACGAGCTGGAGTTCTTCTATGAGGAGCAGTGTCAGAAACTGGAGAACATGGCCATTGAGCCGCTGACCTTCGAGGACTGTCTCTGCCAAATGCTGGACCTCGTCAAGCCAGAAAGTGAAGGGAAGATCACCCTCCATGACCTGAAGAGATGCAAGCTGTCGCACACGTTCTTCGACACCTTTTTCAACATCGAGAAGTATCTGGACCACGAGCAGAAAGATCCCTTTTCAGTGGTGAGGGACGCGGAGACTGAGGGGCAGGAGATGTCCGACTGGGAGAAGTATGCGGCGGAGGAGTACGATATCCTGGTGGCGGAAGAGGCAGCCAATGAGCAGTATAACGACGGATACGAAAATGCCATTGATCCCATAGACCATCAGATCTCGAACGAACTGAGCCTGCGATCGGAAAAGAGGCACTTCTTCGAAATCCCCAACCCTCACTCCAGCCTGGGCCTGGACGAGTACGAGTACGAGGATGATTTTGAATGACCACGTGGAGGTATTTTGGACACTACCGGCTATGGGCAGCAGGGCTGTCATAGCCGCATTTAAAACTCATGTAATTGAATACTAAAACCGTTTCACCGAGTGTGTAGCTGTAGGCTGTTTGCACGTAACCACGGGAACAGGAAACATTGACCTGGAGTATCCAAACACTGTCACAGTAATAAGCATCTTTCCCGTTTTTGTCTAATGTACCTTACATCCATAGAGCTCTCTGCAGTGAACTGAAAGCCTCATTGTTTTCACATTGCTGTTCAACCAGACAGACCAACTGTATACATAAATTTGTTCCTGCAAACAATTTATAGACTGGAAGAGTTTTGATTGGCCAGTAGTTTTGaatgctgttttatttgtaaataggAATGCTTCTAGTATTTATTATGcaaattgttgtgtgtgtgtgtgtgagagaaaataGTGACTGGCATACGCACAGACTATAACAGAGAACCAAATCTGTTTCCTGCttcaaaaaagcaatacaatttgCTACACTGGAACTTAAAACGCTTAGACACTGAAATACACTTGAACTATTGACTGTGCACTAAGtacaaaaagcaatacatttgtcatttcttAGAATTGGATGAATTCAACATTCCAGAGATGATAACCAATCTAATTAACCAACGCATTTATCTTTGCATAACTTCAGGAGAATAATGGATGTTTCAGATTCTTAAGGGTTATCCGGGTGCCTATCAACATGTTTCACACCTATGCATTTGACcttatacaaaatatttctgtgccttgtaatatataatgtatttatcagtgtctcaatttttcattttttactgtATCAAACTTTTGTAGAACAGCTAttcttataaattatatagatgtaaatatttgttattttgtgtgtgcagtgtaaaaaaaaaaagttgtgtaaTGCTGAAATACTGTTAATGGTTTTTCTATCTGCAGAAGTACTTTAAGATTTGACATTGTACTTTAATTCAGGAAAAAAGGAaccaatttgaaaatgtttgtatattatcttgttcattttaaataaagtctctctctcaaaaTAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K11583 PPP2R3; serine/threonine-protein phosphatase 2A regulatory subunit B''

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89992 lncRNA upstream 294342 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 368361 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 410377 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1090049 26231219 ~ 26231565 (+) True G71859
TU89798 lncRNA upstream 1310614 26010799 ~ 26011000 (+) True G71826
TU90084 lncRNA downstream 137408 27475064 ~ 27479444 (+) True G72072
TU90207 lncRNA downstream 902910 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 960013 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 999635 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 1189132 28526788 ~ 28578733 (+) True G72273
AMCG00014690 mRNA upstream 341314 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014683 mRNA upstream 347232 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014685 mRNA upstream 359737 26925834 ~ 26961877 (+) True AMCG00014685
AMCG00014687 mRNA upstream 412240 26908358 ~ 26909374 (+) False AMCG00014687
AMCG00014684 mRNA upstream 420800 26890732 ~ 26900814 (+) True AMCG00014684
AMCG00014701 mRNA downstream 145432 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014705 mRNA downstream 365428 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014704 mRNA downstream 497863 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014706 mRNA downstream 505734 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014703 mRNA downstream 531059 27868715 ~ 27879755 (+) False AMCG00014703
TU89430 other upstream 4465968 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9047254 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 9873161 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 10852501 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 11188812 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 497847 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 531047 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 964717 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2513794 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 3426695 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074561 False 1445 mRNA 0.47 12 NC_007120.7 34488163 ~ 34500197 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_03358707_03369503.mRNA True 2267 mRNA 0.44 13 CI01000009 3358008 ~ 3369577 (-)