RNA id: AMCG00014692


Basic Information

Item Value
RNA id AMCG00014692
length 5817
RNA type mRNA
GC content 0.49
exon number 31
gene id AMCG00014692
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27335695 ~ 27369527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTCGGGAGAGCCTGGGCAATCCCGGAAGAGCGCTGCTGCTCGGCGTAGCGCCCACTGGCTCACACACACGCCGGCCCTGTGCGACCTCCAGCGGCGTGTCTCTCCAACCCCCTCGCTGCCCCACCTTCTCCTGCGGGCCGGGGCTTTGTTTTTGCGGGAGGATGCCACAGGATGGCGCGCTGCTACCATAGAGAATTCTATTGACGtcacctcctccagctctgcccCTCACACTCCCAATGTGAAAAATGAGAACAGGCAGAAGACAGGGagggggaagaggagagCACGGGAAGGCTCCGAGAACGCCAAGAGGAGACGCTCAGAAGCTGGCTGTGGTAGTCGGGGGGGTGCTGACCGCAACCAAGTCAAGAATGGGGGTGACGTGGAGGCAGTCACGCTGTTTGAAGTGGTCACCATGGGGAAGAGTGCCATGCAGTCAGTAGTGGACGACTGGATAGAAGCCTATCAGATTGACCGAGACACCGCACTTTTAGATCTCATCAGCTTCTTCATTCAGTGTGGTAACGGCAGaaatgtttcaaagcaaacatgATGCTGAAGTCATGAACAAAATGGTGGAAGAACTGGATGAGGGGTCTGGCTTGCAGTACAAGAAATTCCTGGCCTTTCCTTGGATCCTCACAGTGACGTGGCCCATGGACGTGGACAGTGGCGAATACCCGCTCACCATGCCTGGGCCATACTGGAAGAAGTTCAGGTCTAATTTCTGTGAGTTCGTGGCCGTGCTGGTGTCCCATTGTCAGTACAGCGTCATCTTCGACAGCTACCTGATGGACACGCTCATCTCCCTGCTCTCCGAGCTGTCCGACTCCAGAGTCCGAGCCTTCAGACACACCTGCACGCTGGCAGCTGTCAAGATCCTATCAGCCCTGGTGGGAGTGACACTGAACCTGGGGGTCAACATAGACAACACTCAGAGGCTGTATGAAGTGGAGAGGGTCAAGATTTCCTCCAAACGTGCCAGTCCCAGAGTGGAGAAGATcgagaggaaaataaatgagTTGCAAGACAAGCGACATGAGATTGAAAACATGATGGATGCTATTTTCAAGGGTGTTTTCTTAAAGAGATACCGTGACGTGATTACAGAAATCCGAAGCATTTGCATGGAAGAGCTTGGAGTCTGGATGAGATTGTACAGCCCGGTGTTCCTAAACGACAGCTACCTAAAGTACATTGGATGGATGCTACATGACAAGCAACCAGATGTCCGTCTGAAGTGTCTGCTGGGATTAAAGGCACTCTATTCAGATGCACTTCTGGCTTCAAAGTTGGACCTCTTCACCAGTCGGTTTAAGGAAAGAATGGTTTCTATGACTTTGGACAAGGACCATGAAGTAGCTGTGCAAGCTATGAAGCTGTTGACCATCATATCTCAGAGCTGTGAAGATGTGTTGACTGCTGAAGATTGTAAACACATGTATCAGTTTGTTTACGCCTCCCATAGGCCCCTGGCTGCTACTGCGGGGGAGTTTGTGTACAAGAAACTGCTCTGTCCCCCTGAACAACAGGAGAAGGAAGACGGGTTGTCAGAGCAGGATGAGCGACGGATCCTCAATGCTGCAAGAATCCGAACCCTCATCCAGTTCTTCAAGGACAGTGAGCTCCATCAGCACGTGGCCTATTTGGTGGACAGCCTGTGGGACTCGGCCGCCTCTCTGCTGAAGGACTGGGACTTCCTAACTGCCCTGCTCATGGAAGAGACGTCTCCTCAGGAGACAGGTCTGACCCGTGCCCAGGAGTCTACTGTCATCGAGGTGCTACTGGCCTGTGTGCGCCAGGCTGCCGAGGGGCCCCCCCAAGCTGGGAGAGGAACGGGGAAGAAGGTGATCACGGCTAAAGAAAGGAAGCAGCAGATGGACGACTGCATACGACTCACTGAGCACTTCATTGTGACGCTTCCTGGGCTTCTTAAAAAGTATTCGGAGGATGCTGAAAAGGTGACACATTTCCTTAAAATACCTCAGTATTTCCATGTGGAGGCCTCTGACACCGGGCATTTTGAGAAGCACCTGCCTGCCTTGCTGACCCAGATCAGCACTGTTCTAGAGCAGCACACGGACTCCGGGGTCCTTGAGGCCGGTTCCAGAACATTCCAGAGCTTGTGCTGTGAGGACATGGCTGCTCACCAGCTCTCCACCTCCTCCAGGGACCAGCTGATCGACCAGTGGGTGTACAGCCTCCACAAACTGCTGGGAGACTTACCAGAAGAGGGTCTGAACCTCGCAGCTGATGATGAGAAGACCTGCCACATTTTAGCGACACTAAAAAGAGTTGCTGCCTTTCACAATGCTCATGACCTTTCCAAATGGAGGCTGTACGATCCTGTTTCTGGACTCCTGAGCCTCGAGGTCCAGCACGGAGGGCTTCCAGACCAGATCGTGGTCCACTCTTTACAGTGCGTCTGCTATGCCGTTCTTTGGCAGCAAAACACAAGCGGGGAAGGGGTTCCTAGCAGGGAGAGGGCGCTCGCTCAGAGGAACCAATTGCGGAGTTTTTGTGAGAAGTGCCAACGTTGCCTGTCCCACAGTCACCCTGCCGTTAAGGAACAGGCTTTCTTGTCCCTGTGTGACGTACTGACCGCCCACAGCTACCAGCTGCTGGTGATGGAGCATACGGGCGCGGCGCCACTCCTCTACACCCCTGACCCCAAGCTCCAAAAGGCACTTATCTCCTTCGTCCAAGAGCACGTGTTCACCGGCACAGACCACGAAAACCATGGGAAAGCCACTGAGAGCGATGCAGGAGCCAATAAGTTGGACGACCTGCACAGGAAAAGGAATTTGCTGGCAGCCTACTGTAAACTGATCGTGAACAGTGTGCTGGAGATGAGCACGGCAGCGGAGATATTCAAACATTACATGAAGTACTACAATGATTTTGGAGACATCATTAAAGAGACTCTGAGCAGGACCAGGCAGATGGACAAAATCGAAAGTGCCAGGGCTCTGGTGCTTTGCCTGCAGCAGCTGTTCCTGAGGTTGAAGCAGGAGCAGGACAGCGGCAAAGTCTGCAGCTCCTCCATTCAGACCTTCAGCAGCATCAAGGAGCTGGCCCGGCGCTTCTCCCTGACCTTTGGCTGGGACCAGATCAAGTCCCGCGAGTCTATCGCCATGATACACAGGGACGGTATAGAATTTGTGTTCAGGGGGTTTGTGCAGACCGGAGAGAGGCACTCCCCTCCCTACATCTCTTACCTCACCATCCTCAGCGAGTTCTCCAGCAAACTGCTGAGGCCCGACAAAAAGACAGTGTACAGTTACCTGCAGCGCTACGCTGGTGAGCACACGGTCAACAACCGGGAGGACTGCTGGCTGCCCCTCATCTACTACAGAGCGTCTCTGCTGGCCACGGCCGAGGGAGAAGACTGCTGTTCCTACATCAGCACCGACACCTTCAAACAGCCTTCCGTCGCCAACCGCTCCCGCTCGCCCTCGCTCCGACACGTGGCCTCTGACGGAGAAATGCATAGTACCTCTTCCCTGGCCTGCAAGACCCCTCATGTTAAAATCCCACCACAGCTCGCGTCCACAGAGATTAAAGGGAAGAAATCCCACAGAACCAGTGAAAATCGAGACGAGAAGAGAGATGGAGACGGGACTCTGAGGATCAGACCTCTGCCGGAGGCCGCCCTGCCAGACCAGGGCCAGTGCGGCCCCACGACGGACGATGTGGACATCGACACGGTGGACGTTGAGTTGACATGACCTTGCAGTCGTGCTCTGAGAAGGCTGTGTTGGCATTTCACCTCCCTCCCCTTTGTCTAGAGAGAGCGGTTGAAGCTCAGAGGAAGATCAGAAGCCTGAGAGACTGTTTGGAGTACGGGTTGGTTAACGCACACTATATCCAGATACTGTCAACTCCACTAGAGGTTCTCGCACTTCCTGAATGACATACCTCTTTATGCACTCTGACAGGTAGTGACTTCATCAAGGAATTTTGCCAAACTAAGctcctaatttatttttccttccaaaGTTTTTCCTTTCCTCCTCCTGTGTATTCATAACCAGAGCCAGTGCTGCAGGTACCTTCATTAAGTGCTTTCACAGCGTTGTTGAGTTATATAATAGCATTTTTGTAAAGGAAAAACTATGGAACAAGTTCAGATAAAATCATGAACAAGAGGCATGACCCAGCGCACATCCTCCCTTTCGTTCCGATTGCACCGCTGTCTTACTGAGAGCTAGGGTTCACTCCTTCGTAGCTGATTGCAGAGGTAGGCTAGCATGGTCTGGACACAGGGAGAATATAGGGATCAGTACAGTCCCTGAACAAGGGAGGCTTGCAGGTGGACCACGACTTCAAACACTCCATTACAAAGACTGTAGGGTAGATTATAGAAAGAATCTTAATACTGTAGCACTTCGTTAATACTGTAACCTAATTTACGTCTGTATTCAGTTTCAATGCACGTCTTTGGTTGCACTACTCTTTATGAAGGTGTTTCTTGTTAACCCACCTGATTTATGTTTCCATTCTAATTTCCTGATCAGCATATGTTGTtcctgtgtaatttattttctattctaatagttggtttaaattattttttaaatgtgtatcttttgatttagtttgttttttgtgtggtgTGTTAGATGCAACATTTGTCTTTCGATGTGAAGTCAGGACTGGCACCAAGCCATGGGAGTATAAATTACTTCTCATGTGTAGATGGGTTTAATGTCTGTtctgtgtatctatctatcccTTGTGAAGCTGCCAACACCAGTCTAGACCTTTCAGCAGAATTGAAGAATGTAAAGTAATAATGGGATCCACATTTTACAATCCTTGTTTGGGTTCAGGTTtcgatttaaaaaatgcttcagACCAACTCACTGGATGCACGGTTGGCACAGATCAATTTACAACTCTTAGTAAATCAGTCACCTTCCAGAAATCAAGGATTCAGGTTTTCTCAGTCCATGATAAAACCCAATAATCAATTTACAGTAATTCTAGAGCTGTCCATCTTTACTgatctatatataaacatacatccTATTCTCAAGCCTTATCCACAATACCTGCTTGACATTTTCAATACCTCCACTGGTGCGGCAGATGCTAAAGATATCAAATTGGATGTGGAGCATGTTTAACAAAGCGAGGGCCCGTGCTGTATGTTTTGGTACTTACTGttgacatgtttattttgatggaacatactgtattttacttttgcAATACAGACATTTCCCATGGTAGCCATTAACACTGCACCAGAAGCTGATGCCAAGACTTTTCACTTGTATTTCATTACCTGTAACTGTTCTAAATACACTATTTAAACTGTGGTGTCAGGAAAAGTAATTGTACTTGACTTTAATTTAAGAACTGTGTACTGGCATCTGTATGGAGGTGAACCAGAGTGTAAATGTAGCTTTGAAATCCCACACCAATAGTTGCTGGActgttaatatatacatgtgtataatGTAATTACAATCTATAATTCATTCATGTTTATGGCAGCTCCTTTTATAAGTGGTGGTTTGCATTATTAATGTTAGATcaactttaaatacaaaattggtATGGGATAGTAAGACACGTCTTGAGTGAGAACATGTGCAATGTGCCAGTTTTCTTGCtaatttaaaatggttatttCGTTGCTCAAATATTCCACCAGTGTTAGATCCAGTATAAAGCTACAGTGTACAGTAGATAGATATGTTGGATGTTTGAGAAGAAACGTGTTAAAGATTGATGGAATTTGGCTATATTTTTTATACCTTCCATTATGTGCATCCCTTTGCTTCAATAAAAAGACTTTCAAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90016 lncRNA downstream 33101 27285420 ~ 27304597 (-) True AMCG00014693
TU89953 lncRNA downstream 405061 26932268 ~ 26932637 (-) True G71961
TU89858 lncRNA downstream 1002698 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 1013444 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 1055733 26281374 ~ 26281965 (-) True G71879
TU90058 lncRNA upstream 49289 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 160769 27530296 ~ 27530643 (-) True G72089
TU90167 lncRNA upstream 466812 27836339 ~ 27837927 (-) True G72139
TU90174 lncRNA upstream 487212 27856739 ~ 27861375 (-) True G72146
TU90346 lncRNA upstream 1208882 28578409 ~ 28578734 (-) True G72280
AMCG00014693 mRNA downstream 33198 27298451 ~ 27304500 (-) False AMCG00014693
AMCG00014689 mRNA downstream 148180 27179103 ~ 27189518 (-) True AMCG00014689
AMCG00014688 mRNA downstream 303679 26980121 ~ 27034019 (-) True AMCG00014688
AMCG00014686 mRNA downstream 433511 26902221 ~ 26904187 (-) True AMCG00014686
AMCG00014679 mRNA downstream 639073 26681180 ~ 26698625 (-) True AMCG00014679
AMCG00014700 mRNA upstream 3545 27373072 ~ 27377772 (-) True AMCG00014700
AMCG00014699 mRNA upstream 11659 27381186 ~ 27386627 (-) True AMCG00014699
AMCG00014698 mRNA upstream 27700 27397227 ~ 27404919 (-) True AMCG00014698
AMCG00014695 mRNA upstream 50524 27420051 ~ 27421669 (-) True AMCG00014695
AMCG00014694 mRNA upstream 61724 27431251 ~ 27440929 (-) True AMCG00014694
TU87063 other downstream 15675205 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 16539551 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 18020531 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 18953474 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 19179108 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 960212 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 2019763 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 4893640 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 5227935 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 5227935 32597462 ~ 32619149 (-) False G73127

Expression Profile