RNA id: TU90042


Basic Information

Item Value
RNA id TU90042
length 4673
lncRNA type sense_over
GC content 0.41
exon number 4
gene id AMCG00014692
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27335695 ~ 27369527 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGGACGGTATAGAATTTGTGTTCAGGGGGTTTGTGCAGACCGGAGAGAGGCACTCCCCTCCCTACATCTCTTACCTCACCATCCTCAGCGAGTTCTCCAGCAAACTGCTGAGGCCCGACAAAAAGACAGTGTACAGTTACCTGCAGCGCTACGCTGGTGAGCACACGGTCAACAACCGGGAGGACTGCTGGCTGCCCCTCATCTACTACAGAGCGTCTCTGCTGGCCACGGCCGAGGGAGAAGACTGCTGTTCCTACATCAGCACCGACACCTTCAAACAGCCTTCCGTCGCCAACCGCTCCCGCTCGCCCTCGCTCCGACACGTGGCCTCTGACGGAGAAATGCATAGTACCTCTTCCCTGGCCTGCAAGACCCCTCATGTTAAAATCCCACCACAGCTCGCGTCCACAGAGATTAAAGGGAAGAAATCCCACAGAACCAGTGAAAATCGAGACGAGAAGAGAGATGGAGACGGGACTCTGAGGATCAGACCTCTGCCGGAGGCCGCCCTGCCAGACCAGGGCCAGTGCGGCCCCACGACGGACGATGTGGACATCGACACGGTGGACGTTGAGTTGACATGACCTTGCAGTCGTGCTCTGAGAAGGCTGTGTTGGCATTTCACCTCCCTCCCCTTTGTCTAGAGAGAGCGGTTGAAGCTCAGAGGAAGATCAGAAGCCTGAGAGACTGTTTGGAGTACGGGTTGGTTAACGCACACTATATCCAGATACTGTCAACTCCACTAGAGGTTCTCGCACTTCCTGAATGACATACCTCTTTATGCACTCTGACAGGTAGTGACTTCATCAAGGAATTTTGCCAAACTAAGctcctaatttatttttccttccaaaGTTTTTCCTTTCCTCCTCCTGTGTATTCATAACCAGAGCCAGTGCTGCAGGTACCTTCATTAAGTGCTTTCACAGCGTTGTTGAGTTATATAATAGCATTTTTGTAAAGGAAAAACTATGGAACAAGTTCAGATAAAATCATGAACAAGAGGCATGACCCAGCGCACATCCTCCCTTTCGTTCCGATTGCACCGCTGTCTTACTGAGAGCTAGGGTTCACTCCTTCGTAGCTGATTGCAGAGGTAGGCTAGCATGGTCTGGACACAGGGAGAATATAGGGATCAGTACAGTCCCTGAACAAGGGAGGCTTGCAGGTGGACCACGACTTCAAACACTCCATTACAAAGACTGTAGGGTAGATTATAGAAAGAATCTTAATACTGTAGCACTTCGTTAATACTGTAACCTAATTTACGTCTGTATTCAGTTTCAATGCACGTCTTTGGTTGCACTACTCTTTATGAAGGTGTTTCTTGTTAACCCACCTGATTTATGTTTCCATTCTAATTTCCTGATCAGCATATGTTGTtcctgtgtaatttattttctattctaatagttggtttaaattattttttaaatgtgtatcttttgatttagtttgttttttgtgtggtgTGTTAGATGCAACATTTGTCTTTCGATGTGAAGTCAGGACTGGCACCAAGCCATGGGAGTATAAATTACTTCTCATGTGTAGATGGGTTTAATGTCTGTtctgtgtatctatctatcccTTGTGAAGCTGCCAACACCAGTCTAGACCTTTCAGCAGAATTGAAGAATGTAAAGTAATAATGGGATCCACATTTTACAATCCTTGTTTGGGTTCAGGTTtcgatttaaaaaatgcttcagACCAACTCACTGGATGCACGGTTGGCACAGATCAATTTACAACTCTTAGTAAATCAGTCACCTTCCAGAAATCAAGGATTCAGGTTTTCTCAGTCCATGATAAAACCCAATAATCAATTTACAGTAATTCTAGAGCTGTCCATCTTTACTgatctatatataaacatacatccTATTCTCAAGCCTTATCCACAATACCTGCTTGACATTTTCAATACCTCCACTGGTGCGGCAGATGCTAAAGATATCAAATTGGATGTGGAGCATGTTTAACAAAGCGAGGGCCCGTGCTGTATGTTTTGGTACTTACTGttgacatgtttattttgatggaacatactgtattttacttttgcAATACAGACATTTCCCATGGTAGCCATTAACACTGCACCAGAAGCTGATGCCAAGACTTTTCACTTGTATTTCATTACCTGTAACTGTTCTAAATACACTATTTAAACTGTGGTGTCAGGAAAAGTAATTGTACTTGACTTTAATTTAAGAACTGTGTACTGGCATCTGTATGGAGGTGAACCAGAGTGTAAATGTAGCTTTGAAATCCCACACCAATAGTTGCTGGActgttaatatatacatgtgtataatGTAATTACAATCTATAATTCATTCATGTTTATGGCAGCTCCTTTTATAAGTGGTGGTTTGCATTATTAATGTTAGATcaactttaaatacaaaattggtATGGGATAGTAAGACACGTCTTGAGTGAGAACATGTGCAATGTGCCAGTTTTCTTGCtaatttaaaatggttatttCGTTGCTCAAATATTCCACCAGTGTTAGATCCAGTATAAAGCTACAGTGTACAGTAGATAGATATGTTGGATGTTTGAGAAGAAACGTGTTAAAGATTGATGGAATTTGGCTATATTTTTTATACCTTCCATTATGTGCATCCCTTTGCTTCAATAAAAAGACTTTCAAAGACtacttgtaaaatgtgtgtaattagATGCTCTGAGATCTACTTTAttttgagagagagactttatttaaaatgaacaagataatatacaaacattttcaaattggtTCCTTTTTTCCTGAATTAAAGTACAATGTCAAATCTTAAAGTACTTCTGCAGATAGAAAAACCATTAACAGTATTTCAGCAttacacaactttttttttttacactgcacacacaaaataacaaatatttacatctatataatttataagaaTAGCTGTTCTACAAAAGTTTGATacagtaaaaaatgaaaaattgagacactgataaatacattatatattacaaggcacagaaatattttgtataagGTCAAATGCATAGGTGTGAAACATGTTGATAGGCACCCGGATAACCCTTAAGAATCTGAAACATCCATTATTCTCCTGAAGTTATGCAAAGATAAATGCGTTGGTTAATTAGATTGGTTATCATCTCTGGAATGTTGAATTCATCCAATTCTaagaaatgacaaatgtattgctttttgtaCTTAGTGCACAGTCAATAGTTCAAGTGTATTTCAGTGTCTAAGCGTTTTAAGTTCCAGTGTAGcaaattgtattgcttttttgaaGCAGGAAACAGATTTGGTTCTCTGTTATAGTCTGTGCGTATGCCAGTCACtattttctctcacacacacacacacaacaatttgCATAATAAATACTAGAAGCATTcctatttacaaataaaacagcattCAAAACTACTGGCCAATCAAAACTCTTCCAGTCTATAAATTGTTTGCAGGAACAAATTTATGTATACAGTTGGTCTGTCTGGTTGAACAGCAATGTGAAAACAATGAGGCTTTCAGTTCACTGCAGAGAGCTCTATGGATGTAAGGTACATTAGACAAAAACGGGAAAGATGCTTATTACTGTGACAGTGTTTGGATACTCCAGGTCAATGTTTCCTGTTCCCGTGGTTACGTGCAAACAGCCTACAGCTACACACTCGGTGAAACGGTTTTAGTATTCAATTACATGAGTTTTAAATGCGGCTATGACAGCCCTGCTGCCCATAGCCGGTAGTGTCCAAAATACCTCCACGTGGTCATTCAAAATCATCCTCGTACTCGTACTCGTCCAGGCCCAGGCTGGAGTGAGGGTTGGGGATTTCGAAGAAGTGCCTCTTTTCCGATCGCAGGCTCAGTTCGTTCGAGATCTGATGGTCTATGGGATCAATGGCATTTTCGTATCTAAAAAGGCAAAAACATAGTCCACCATTAAGACTGAAATCCATCATAATATAGCGTTGGGCTCCCGAGCTTAGTGAGCCTACATTTTATTAccaatttcaaataataaaccCCATATTCCCACATTTCCCTGCTGAATAGAATCCTCCCTGGACCCTTGTTTCAGAATAACGTTTAGTACTAGGTGTTGAAAACTCCAGCAGAGGCACCATTCAGCTCATTAGATCAAGTGCATATTCTTGTGTTGAGCATTGCATGTATTTCAGATCTATATTTCATCCCCCCCACTGTCGGTTCCTGTCCACCGAGCACATTCACAGAGAAGAGTAAGATGAAGACACCAGAGTCTCAACACAGGACAGTAGAAGGAATCAATGTACAGGGTTTTAAAGGACTAAGACACCCACACCAAATTCATTAgtggaccccccccccccacgccccACCTGTGTCTGTCTTACCTTCCAGCACAAAGCCTTTAGAAGTCAGAGGAGTCCCTACAATGGCCATGGGATAACTGTTAGTGGGGCTGACATCTCCCTTCCTCCTCTTTTATTGACCTAAAGAGCTGTCTGTGTCAGAGAACTAGCCAATACCAAAGCTATATTCCACTTCCTGAAACCCTGTAGGTCAAAATGATAACTCTCCCTGGTTATGTTTCTTTGAGCTACATTTCCACAATAAACCTGGGATTTCTGCAagaattcatatatatacagtgaggggaaaaaagtatttgatcccctgctgat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90016 lncRNA downstream 31098 27285420 ~ 27304597 (-) True AMCG00014693
TU89953 lncRNA downstream 403058 26932268 ~ 26932637 (-) True G71961
TU89858 lncRNA downstream 1000695 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 1011441 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 1053730 26281374 ~ 26281965 (-) True G71879
TU90058 lncRNA upstream 76066 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 187546 27530296 ~ 27530643 (-) True G72089
TU90167 lncRNA upstream 493589 27836339 ~ 27837927 (-) True G72139
TU90174 lncRNA upstream 513989 27856739 ~ 27861375 (-) True G72146
TU90346 lncRNA upstream 1235659 28578409 ~ 28578734 (-) True G72280
AMCG00014693 mRNA downstream 31195 27298451 ~ 27304500 (-) False AMCG00014693
AMCG00014689 mRNA downstream 146177 27179103 ~ 27189518 (-) True AMCG00014689
AMCG00014688 mRNA downstream 301676 26980121 ~ 27034019 (-) True AMCG00014688
AMCG00014686 mRNA downstream 431508 26902221 ~ 26904187 (-) True AMCG00014686
AMCG00014679 mRNA downstream 637070 26681180 ~ 26698625 (-) True AMCG00014679
AMCG00014700 mRNA upstream 30322 27373072 ~ 27377772 (-) True AMCG00014700
AMCG00014699 mRNA upstream 38436 27381186 ~ 27386627 (-) True AMCG00014699
AMCG00014698 mRNA upstream 54477 27397227 ~ 27404919 (-) True AMCG00014698
AMCG00014695 mRNA upstream 77301 27420051 ~ 27421669 (-) True AMCG00014695
AMCG00014694 mRNA upstream 88501 27431251 ~ 27440929 (-) True AMCG00014694
TU87063 other downstream 15673202 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 16537548 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 18018528 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 18951471 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 19177105 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 986989 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 2046540 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 4920417 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 5254712 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 5254712 32597462 ~ 32619149 (-) False G73127

Expression Profile