RNA id: TU90016


Basic Information

Item Value
RNA id TU90016
length 5503
lncRNA type sense_over
GC content 0.36
exon number 4
gene id AMCG00014693
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27285420 ~ 27304597 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGAAGTTGAACAGTTTCAAATGTGCCAGATCAGAATCCACTCTGCTCAATACAACTCACTTCCCCCTAAATAACTCTTATTGCTCTCTGCTCCAGCAATGTTTCACTCGATATACTTTGGGAAAATTAGTAAGGAAGAAACGGAGAAAATACTGGAATCGTATGGAAGAGACGGGAGTTTTCTCGCTAGAGACAGCGAAACGTTACCTGGAGTCTTTTGTCTGTGCGTGCGGAGAAACACTTTCGTCCACACCTATAGGATGTATCAATCTGCGGGGAAATGGGCTGTTAAGACGCTTCCCACAGTGACGCCCCAGTTTTTTGAGTCATTGGACAAACTCATTGGAACTTACAGAAAAGACCTTCCAGACAACATGGTTCCTTTGCTGTACCCCTTGGAAAAAGCAACACTCCTCAAGAACAGCAGAAGCAATGagTGCCTGTATCTGGACATGAGCTAGGCTGATGGCTCTGTACAGGTGAACATCATCTCTTCAGCCAAGAGGCTTCGTTCTCTGAAGCGTGTGGTTTTACATGCTGAAGAATACAACAGGACTGCCTTACTTTTTTGCTTCTTATTTTGTCTACTGTTTTGAAGCACGGACCCTGTTTCTGAAAAGAAATTGCATTTAAGAAGACTAACACTTTTTTTGGTAGTGCGActtaatacatttctgtgtgaTACATATATTTCTTCCTGAAAACCATTACTAACACAAATATTGCATTCCTGTGGCAAAAATGGCCCTACTGGCATTTTATCCAGtttagcattttttattttattataaatttaaaatgaaacaagctctgtttgtgtttgcataTCTAACAGTGCCACTATTATATTCAcaggagagggggtgggggggggtcaaTGGTTGTTTTCCAGTTTTGTACTTTACTCGGCTAGTTAGCTATAGTAGATGGTTTCTTTGCAGAGATGCATTAAGTGTCGGTGAACATGACAGGGTCGAATAGAAACCTTACTGATATGCAATGAGATCAACctgattttaatgaaaacttaTTAAGTTTCTCAGAAAATGTGGGGGCGGTTGTCATCTCAAAGAGGTCTCTGTAATGTTTCCTTTGACACTGAGAAATCTGATGTCGAATTGAAAGCCACAGCAAGCCGAGTACTGGTTAGGAAAGGACTAACCTTGGGCTTTAAGACAATTAGCCTGTCTTTTAGCTAATTTCTTCTCTATACTTCAGCCAGTTTAGTTTGCATAGGCACACGTTTTTTATTTCGCTGTTGTTTGTGAATCATACTCTATTGTAAATAGATCATGCTATTGTATCTTCTTCTTTTGGGATCATGGTGAGGCACCATACAATCGTACATGAGTCTAAAATTGCGGGGAAGTAATAAACCAAAGTGATGTGATTTTCTCTTTGGAAATGGATGATTAGCTTTTTCATAATCCAAGGGTGAAGGTATAGCATTCCTTTCAATAAGATTTTCAGGTGATCCTGTAATTGTGACTGCCAGGGTTTTCCGCATTGATAGACTTTGACATCTGCACATCTGACTTGCTTTAGAAGTCATATCTTACTTATGAATCTCTGTAATGCTTTGAGTGGTATTCAATAAGATAGATTGTATGGGGTGAATGGTCATTTGTTTGCCGTGCTAAATAGTCTCCATCGCTTCCAAAAACTTGCGAATTTTACAGTTTTAGCTCTATCACATTATGGAAGTCATGACCAGTATCACTATGAACTGTAactgaaaggggaaaaaagctaATGTGCTGCCATTTGCAAACTATTTTAACACATTAGCCATTCCTCATACTTGATAGGCCGGTCTGCTTTCAAGATAACAGGAAAAATTGATTTCATGAATTAGCAAAATCAAATGGCTTAGAAATAGTTTCCAAGAAAACCAACTAAAAAGACTGAACTGCGAAATCTATTTCTCGGACGGTTTTATCAGCGGATTGACTTTAAGATTACAATCTTGGCGTCATGGGTTGGTATAACCAAAACAATATGTTCTATTTGATTGTTGTGAGGAAATATGCTGCAGTTGTTTTGGCCCAACAAAGCAATTCCCCCTCTTTAAATATCATGGGATGGGAAAAGACTCAAGTCGGGTTTGGTTAACTATGCCACTTgctttatagtttgttttttctacccTCAGTAAAGGAAACCCATTTATTATCTCACCCTGGGCTTCACCTTTGAACGAGCATCACGGAGTGCTTTCATTCTAGTCTCCTGAATTTCATCATCCATTTTACATTACAGCTCCAGCTTTCTTCACATAAGGTGTGCCTTCTTCTGCCAATCACTGGGGCACTCTCTTCagaaagtgttttaataattaaaataaatgcaggaaCAGATTAGAAAGGGGGTGGGTGTTCAGCTGATTGGGTTAGAATTGAGAAGCCTGGTGTCACGTTTCTCTtataaacacactgaaacactgaaagtaGACACCTGGGAACTGGGTTTCACCTCTGTATTtaagtattgttattttgtgtttaaccATGTCATACTTATATACTATTATGCTTTATTGCAGTTACTGCTAATGTTTAaagatgatttttttaaagaaacatattCTTGTTTTTGACAGTCTAATAACCTTGGAAGAACCCATTCTTTAAatttgacaaaaaaactaaaaatgttttgctacATCACAACAATACAAGTTTATTCagtgaaaagctttttttttggtatagtCAATTACTTGTGActttgcctttatttatttatttcaagaataAAGCACTTGACTTCATGCTTTGAAGCAAATACGTATACtcctataaataaatgtggtaATTTCTGCTCATGAATAAGTAGCAGGTTTCACCACAGACTGAAGCAAAGATATAATTCTAAGGCCCaagtatgtgtgtttttgccaACATTGTCTCTGAGACATGGTAAAGGTTTGGTCACATTTCTCTGCATCAGGATTTTTCTGATTACCAGTTAGGCAGTAAAGAGATAGAACATTGAAACCTCGAGCTGGCAGAGTTTAACCGTAGTAAAACACTTTTCAAGTCActttttgatgtgtttttcaaagCCCCTTCTGAGTCAACAGTGACTAATTTGTTGCAAAGCAATTAGTCACTGCAGACACCCTTTAGTTCTGATATGAAAATTCACTCACATCACATACAGTTGCCTGATCCGATTCTGTAAACATGCACACTTCTGTTTCAGCTCCCAGGTAAGGGTAAATGCTGTCTAAGTGAAATACAACGGCAGAGGATTTTCATCCCACTTCCTAAAgtgaaaaaattatatttacaaatgtgatagaaatatgaataaatatgtattgaaaaagAGAGTGAGATTGGCCAGAAATTATCAAGTGCACAAACTGCATTTTGCAGGGAAATCAGTGACTTACATTTTTAGCTAAACTAACGTTGAATGAACAATGCCAGGTTGTTGGGTGAACCAGTGTAGCCTTTTCATAGGCATTGTCTAATTATTCCCTCCTGACAAAAAGTACAGAAAACctgtaattcattttatatCCACATTTGAACATAAGGATGTTTTTATACTATAAAACATGTGCTCAGATAAGACTACATCAAATGCACACCTAATAGCTTTGTTTAAACACAATATCAGAGGTATAAATTACAGCAAGTGTAATTTGATAGTTGAGGCTTGGTGCAAAGGGCAGAAATTAGCATTCTTTCCCCTTATACcgcattttttgtgtgttttttttagcttATTAGGCTACATGGCCATTCTTAAATTGGTCATTTTTCCAGACCTGGATGGCTTCATTTTTTCTGAGCACACAAGTTGTGTAATCAAATCACATTCTGATTTTGCCTTATTGAATTTCTTAGGTATTGCATATTGTATTctgtataaatatgaaaatacataaatatatacatgtgcgGTGCATAATGCAGGAGGGGTGTAGGGGGCTAATGTGTCGACAGTGTCTCATTATGAGTCTACggcacaaacagcagagcttCAGTACTGTGAGGAGCACCCATGCAACTCTCACTGTTAGCATTGTGGGGTCACAGATGTCTAGTAAGGGACAGTGCATCTCTGGTCAACACAAGCCCCAGTTGCATGCCATTAGTCCAATTCTCCATTTTCTAGAAATGGAATTAAGAGAGGTTTTTTTTGACAGCATTGCGTTTGTACACTTATGCTCAGttcgtgtgtgtgagtgtgtgtttctgagtaATAAGAAATACGTAACTTCCGgaatgattttacattttctgacttccttttttttttaaggtaactTTAATAACCCAACGTTCCATTCTCTCATTCATTACTAAGCTCTTACACAAACTTTGGAAAAGCAGGCCCCAAGTCAGCAAAAACAGTTTCTTTACAAGATTGATCAGAGCCAGGTTGCTGGGAAATGTACATGATTAGCAAAttagtgtcacacacacactgctccaaAGCTCACTGGTTGGACACTCTGTATTTCACCTCGGATGTACATTTGCAAttcttttcctttcatttagcTTCAGAAGGTCTCTTATTTGTTCTAGAACAGCAGctcagaaataattaaacagaaattataaaaaCTATGGAAATGTTAAGGTTCAAAGACCTAAGTGTTTGAAAACGGCAAACATTTAGACTGCTGTGTCACAGATAATACTCCAGTCATGAGACTCGGCAGTTAATTGTGGAGTGCAGCAAAATATATGCTCTGTTTCAATGTATTACAGTCACACCaagattttcaaatgtttttgcaatttgAATCCTGCCCTCAACACACCAAATTAAGAACGCGTCATTCTTAAAATATTCACAGAGTGACCTCTTCATGAAACTTAATGTGGGCTAGGTGATTTTTTTTGAATTACAGCTATTCTATGAACTTTAAACTCCTGTGTATAtgcagctttttcatttttacttttatttttttattatcacaGACTATATAGGACACTGATTTGTGTTGGGTACAATGAGGAACTGATAGAAATCTGCTCAGGAAAACTAACCATTAACAAAAGCTGTACTATTTTTATGTCCATTTGCTACatgtatgctttaaaaataaataaataataataataataaaaaatataaaagggaTAACAATACACTAGAAACATTACATATTCATTGAGtaaattgactttttttgtgtTGCTACTGTTTTCCATTTGGAGTTCTGCATCAATTGAATGACTGGATTTTCTTTTAAGTGTCAGACATTTGTTATCATTTggataaatgaataataaaaaatcataccaacgtttatcttttaaaattttacatgtaaaatgtttgctAATTATCTGTCTTACCTCTGCTGTTTACAGACCAAGGAACAAGCTGTTATTTGTTGTAAcatatttcattgcattttacaTGTCTTACTAAACAAAtggattttctttcttcaaatattaaaaatgatttaaaagttttaatAGTTGcacatttagttttagtttttaatataaattgaaaatgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89953 lncRNA downstream 352783 26932268 ~ 26932637 (-) True G71961
TU89858 lncRNA downstream 950420 26334655 ~ 26335000 (-) True G71882
TU89856 lncRNA downstream 961166 26324038 ~ 26324254 (-) True G71880
TU89855 lncRNA downstream 1003455 26281374 ~ 26281965 (-) True G71879
TU89852 lncRNA downstream 1017013 26267867 ~ 26268407 (-) True G71876
TU90042 lncRNA upstream 31098 27335695 ~ 27342750 (-) False AMCG00014692
TU90058 lncRNA upstream 114219 27418816 ~ 27419045 (-) True G72049
TU90102 lncRNA upstream 225699 27530296 ~ 27530643 (-) True G72089
TU90167 lncRNA upstream 531742 27836339 ~ 27837927 (-) True G72139
TU90174 lncRNA upstream 552142 27856739 ~ 27861375 (-) True G72146
AMCG00014689 mRNA downstream 95902 27179103 ~ 27189518 (-) True AMCG00014689
AMCG00014688 mRNA downstream 251401 26980121 ~ 27034019 (-) True AMCG00014688
AMCG00014686 mRNA downstream 381233 26902221 ~ 26904187 (-) True AMCG00014686
AMCG00014679 mRNA downstream 586795 26681180 ~ 26698625 (-) True AMCG00014679
AMCG00014678 mRNA downstream 639488 26643240 ~ 26645932 (-) True AMCG00014678
AMCG00014692 mRNA upstream 33101 27337698 ~ 27369527 (-) True AMCG00014692
AMCG00014700 mRNA upstream 68475 27373072 ~ 27377772 (-) True AMCG00014700
AMCG00014699 mRNA upstream 76589 27381186 ~ 27386627 (-) True AMCG00014699
AMCG00014698 mRNA upstream 92630 27397227 ~ 27404919 (-) True AMCG00014698
AMCG00014695 mRNA upstream 115454 27420051 ~ 27421669 (-) True AMCG00014695
TU87063 other downstream 15622927 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 16487273 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 17968253 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 18901196 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 19126830 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 1025142 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 2084693 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 4958570 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 5292865 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 5292865 32597462 ~ 32619149 (-) False G73127

Expression Profile