RNA id: AMCG00014704


Basic Information

Item Value
RNA id AMCG00014704
length 2574
RNA type mRNA
GC content 0.37
exon number 5
gene id AMCG00014704
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27835503 ~ 27841871 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAAATGGCGGATCGCAGAGAAGGTTGGTTGtggacatgtttttgttttttggggggttagaaaagaaaccaaaccaCAAGCAGTGGTCCGGTATTCTCCTGGGATAGTCGgcatgattaaaaatatatagttctaTATGATGTAGACAGTGTTGTGCCAGTTTAGCCAATGGTACGTCAAGAAATGACAGTCACTGGTACAGCTGTGGGTAccaaaagtatttttgttttgaatgtcaaTCACATCAAAAAAATAGATGCCTCATAAATCATTTAGTTGTCAGCAACGTTTGGACAACATATCTATTTTCTGCATCTTATTATTTAACTTACACATGACTTATCATGGTCCATACGTATATGCTTTCAATGTGACTGACAtaagaatgtattaaaaactaCGATAGGGTTTGAACGTGTCCattgtatttgtgtaatttacATTATTGCAGTATAGACAAACTAGCAAAGATGGAGGTGTATTGGTAAAGATATTGATTCCTGTCCTTTTGCTTGCGCACATACGGTAtctatgtatacatacacacacaaacatacatacagcataatccaaatgcatatatatatatatatatatatcttacagGATGTTACTACTGCACACATTATCTTTCAGCAGATGCATGACACTGGGATGTTTCTCTTCAAATTTCAAatgatgttgtttgtttttgggactttaaatgcagtttaattaattatgtggCCCAACAGGATTAATCACATCCATCTTAAATAAATAGGCTACTAAACACTCCCAAATGGAAgtctaacattaaaaaaattaataacacatttaaaggcATTGAATAAATGAATTCATAAAATGAACTCCAGGTTCTTGgaagtatatatattaatactttaCTGTTGGTGGTGtttatgtaaattacaataatgaaacctgatttatatatctatttattcatgtgGGCAGGGGAGATAATGTGGAGAAATGTAAGATATTCCAGGctgtcttttgtgtttattaattaaactgagTTCCAAGTCAACCTGAAAGGCATCATTGTAGATGTGTGACCCAGTTCAATTTGAATCTTAACTTTAAGGTGACTGAAGTTAAAATGGGTTTCATCCACTTTCCCTCCTTTCAATCTCAGCGTTCACCTTAAGAGATGCTGCAGAACGCCCTTTGAAATTGAAACCCTGCTGTGGTGGAAATCAGTTTCTAGATTGGAAAGGGTTCTACTTTCATCAGTACAGAGAAGTAGCCTTTAAAAGATATCTCTTTGGTCACCCTAGTCTTTGTATTTCTATGTAggttatatttattgtttaaacacCCAAAAGAGAATTTGATTCATTCTTTATACAGCAGaactgtttgttgttgttgttttttttgtttttttaacttttcttgttttctgctAAACATCTATAGTGaagttttcagttttagttttcaaGTTGGATAATTGTTAGGATGCTTTACATTATCTTTTGATGTCCAAAGACATAGAGGTTCAGCCTGAAGGGTCTTGCCATGTAAATGTTGTCCTTATTGGAACCGccatcaaagaaacaaaactcatATGTGTACTTTTTCACTCCAAATAAAGAAGAGAGTGACGATGACTCGTATGAGGTTGTGGACCTAACAGATTATGCCCGGCGTCATCAGTGGTGGAGCCGCGTGTTTGGGCAGAATTCTGGACCTATTGCGGAGAAGTACTCGGTCGCCACTCAGATTATGATGGGAGGAGTGACTGGCTGGTGTGCTGGGTACCTGTTTCAGAGGGTGGGGAAGATTGCAGCAACAGCTATCGGTGGCGGATTCCTTTTACTACAGATTGCCAACCACAGTGGGTATGTACAAGTTGACTGGAAGAAAGTTGAAAAAGATGTTAACAAAGCCAAAAAGCACCTCAAGAAGAAGGCAAACAAAGCAGCCCCTGAGATCAACACATTCATTGAAGAGTCGACAGAATTCGTCAAGAAGAACATAGTGCTTTCCAGCGGGTTTGTGGGCGGTTTCTTGCTTGGCCTGGCATCGTAGACAACATCGATGGCCTGCCGTCATGCCGACCAGAAGAGCAGTGGATATTAACTGTGAGGATTTTCCTCTTGTTCTTCTCTGAAGGAACGGGTTAAGATTGGAGGAAGAGGGGATGCACAACATACAAATAACGGCATGCTGAGATGCTCCCCTTTTGCCGTGCCTACCAAACCGCCTCTCActataaagtaaaacatattgtTAGGTACTGTACATAGGCTGGGCTTTATGTTTCACCTTCCATTGCGCTTTTCTTTGCACCGTCATTGATGAGATCTAGATGTACAAATTACATTGAGTCATTCTGGAATTATAATTTTAACTGTGTCACACACTACTTCTCGGGGTGTCCATTTACAGGTCTAAATTATCCCGGGAATGTAcagaatctttattttttgttatgtcATTTATTGTGTGCCTCTATTTCATGatttaacaatgcaatatatgaTAGAAGAGGTGAAgttatattgttgtatttatttctgtgctggtataattattaaaaataaaatgtttttttttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 356075 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 808247 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 882266 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 924282 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1603954 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 398700 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 455803 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 495425 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 684922 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 989890 28831756 ~ 28831975 (+) True G72329
AMCG00014705 mRNA upstream 121251 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014701 mRNA upstream 344255 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014691 mRNA upstream 497863 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014690 mRNA upstream 855219 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014683 mRNA upstream 861137 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014706 mRNA downstream 1524 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014703 mRNA downstream 26849 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014708 mRNA downstream 49985 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014711 mRNA downstream 325167 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014709 mRNA downstream 380795 28222661 ~ 28235915 (+) True AMCG00014709
TU89430 other upstream 4979873 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9561159 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10387066 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11366406 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 11702717 16129525 ~ 16132802 (+) False AMCG00014508
TU90175 other downstream 26837 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 460507 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2009584 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2922485 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 3136350 30978216 ~ 30978825 (+) True G72785

Expression Profile