RNA id: TU90165


Basic Information

Item Value
RNA id TU90165
length 2621
RNA type TUCP
GC content 0.37
exon number 4
gene id AMCG00014704
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27835503 ~ 27841871 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGAATAGTTTAACTGCAAAATGGCGGATCGCAGAGAAGGTTGGTTGtggacatgtttttgttttttggggggttagaaaagaaaccaaaccaCAAGCAGTGGTCCGGTATTCTCCTGGGATAGTCGgcatgattaaaaatatatagttctaTATGATGTAGACAGTGTTGTGCCAGTTTAGCCAATGGTACGTCAAGAAATGACAGTCACTGGTACAGCTGTGGGTAccaaaagtatttttgttttgaatgtcaaTCACATCAAAAAAATAGATGCCTCATAAATCATTTAGTTGTCAGCAACGTTTGGACAACATATCTATTTTCTGCATCTTATTATTTAACTTACACATGACTTATCATGGTCCATACGTATATGCTTTCAATGTGACTGACAtaagaatgtattaaaaactaCGATAGGGTTTGAACGTGTCCattgtatttgtgtaatttacATTATTGCAGTATAGACAAACTAGCAAAGATGGAGGTGTATTGGTAAAGATATTGATTCCTGTCCTTTTGCTTGCGCACATACGGTAtctatgtatacatacacacacaaacatacatacagcataatccaaatgcatatatatatatatatatatatatatatatatatatatatatatatatcttacagGATGTTACTACTGCACACATTATCTTTCAGCAGATGCATGACACTGGGATGTTTCTCTTCAAATTTCAAatgatgttgtttgtttttgggactttaaatgcagtttaattaattatgtggCCCAACAGGATTAATCACATCCATCTTAAATAAATAGGCTACTAAACACTCCCAAATGGAAgtctaacattaaaaaaattaataacacatttaaaggcATTGAATAAATGAATTCATAAAATGAACTCCAGGTTCTTGgaagtatatatattaatactttaCTGTTGGTGGTGtttatgtaaattacaataatgaaacctgatttatatatctatttattcatgtgGGCAGGGGAGATAATGTGGAGAAATGTAAGATATTCCAGGctgtcttttgtgtttattaattaaactgagTTCCAAGTCAACCTGAAAGGCATCATTGTAGATGTGTGACCCAGTTCAATTTGAATCTTAACTTTAAGGTGACTGAAGTTAAAATGGGTTTCATCCACTTTCCCTCCTTTCAATCTCAGCGTTCACCTTAAGAGATGCTGCAGAACGCCCTTTGAAATTGAAACCCTGCTGTGGTGGAAATCAGTTTCTAGATTGGAAAGGGTTCTACTTTCATCAGTACAGAGAAGTAGCCTTTAAAAGATATCTCTTTGGTCACCCTAGTCTTTGTATTTCTATGTAggttatatttattgtttaaacacCCAAAAGAGAATTTGATTCATTCTTTATACAGCAGaactgtttgttgttgttgttttttttgtttttttaacttttcttgttttctgctAAACATCTATAGTGaagttttcagttttagttttcaaGTTGGATAATTGTTAGGATGCTTTACATTATCTTTTGATGTCCAAAGACATAGAGGTTCAGCCTGAAGGGTCTTGCCATGTAAATGTTGTCCTTATTGGAACCGccatcaaagaaacaaaactcatATGTGTACTTTTTCACTCCAAATAAAGAAGAGAGTGACGATGACTCGTATGAGGTTGTGGACCTAACAGATTATGCCCGGCGTCATCAGTGGTGGAGCCGCGTGTTTGGGCAGAATTCTGGACCTATTGCGGAGAAGTACTCGGTCGCCACTCAGATTATGATGGGAGGAGTGACTGGCTGGTGTGCTGGGTACCTGTTTCAGAGGGTGGGGAAGATTGCAGCAACAGCTATCGGTGGCGGATTCCTTTTACTACAGATTGCCAACCACAGTGGGTATGTACAAGTTGACTGGAAGAAAGTTGAAAAAGATGTTAACAAAGCCAAAAAGCACCTCAAGAAGAAGGCAAACAAAGCAGCCCCTGAGATCAACACATTCATTGAAGAGTCGACAGAATTCGTCAAGAAGAACATAGTGCTTTCCAGCGGGTTTGTGGGCGGTTTCTTGCTTGGCCTGGCATCGTAGACAACATCGATGGCCTGCCGTCATGCCGACCAGAAGAGCAGTGGATATTAACTGTGAGGATTTTCCTCTTGTTCTTCTCTGAAGGAACGGGTTAAGATTGGAGGAAGAGGGGATGCACAACATACAAATAACGGCATGCTGAGATGCTCCCCTTTTGCCGTGCCTACCAAACCGCCTCTCActataaagtaaaacatattgtTAGGTACTGTACATAGGCTGGGCTTTATGTTTCACCTTCCATTGCGCTTTTCTTTGCACCGTCATTGATGAGATCTAGATGTACAAATTACATTGAGTCATTCTGGAATTATAATTTTAACTGTGTCACACACTACTTCTCGGGGTGTCCATTTACAGGTCTAAATTATCCCGGGAATGTAcagaatctttattttttgttatgtcATTTATTGTGTGCCTCTATTTCATGatttaacaatgcaatatatgaTAGAAGAGGTGAAgttatattgttgtatttatttctgtgctggtataattattaaaaataaaatgtttttttttttaatgatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 356059 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 808231 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 882250 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 924266 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1603938 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 398695 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 455798 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 495420 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 684917 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 989885 28831756 ~ 28831975 (+) True G72329
AMCG00014705 mRNA upstream 121235 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014701 mRNA upstream 344239 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014691 mRNA upstream 497847 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014690 mRNA upstream 855203 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014683 mRNA upstream 861121 26966745 ~ 26974382 (+) True AMCG00014683
AMCG00014706 mRNA downstream 1519 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014703 mRNA downstream 26844 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014708 mRNA downstream 49980 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014711 mRNA downstream 325162 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014709 mRNA downstream 380790 28222661 ~ 28235915 (+) True AMCG00014709
TU89430 other upstream 4979857 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9561143 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10387050 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11366390 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 11702701 16129525 ~ 16132802 (+) False AMCG00014508
TU90175 other downstream 26832 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 460502 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 2009579 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2922480 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 3136345 30978216 ~ 30978825 (+) True G72785

Expression Profile