RNA id: AMCG00014706


Basic Information

Item Value
RNA id AMCG00014706
length 2276
RNA type mRNA
GC content 0.53
exon number 15
gene id AMCG00014706
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27843390 ~ 27861363 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCCCGCATGGCGCTGCCTCTGCTGCCGGGGAACTCCTTCAACAGAAATCTGGGAAAGGAGAAGTTCCACAAGTCCCAGCACTTTGATTATTCCAATGGCGTACCAATGTTGGTGGGTGCCAAGAAGCCTGGCATAGGGGGGGAGCTGCTGCTGGGTCAGAGTCTTCGCCCCGATTTCTCAGTGTATCCCAAGGGAGAGGGCAGTGCCAGCCCCGCCTATGTCGCCTTTGACAAACAGGTGCTGTGCTTTGACGCCTACTTCCAGGAGGATGTGCATGAGAAGCCAGAGGAGCCATACAGAATCAGGGAGTGCAAGATCTACTTCTACCTGGAGGATGACACCATAAAAGTGGTGGAACCAGAGGTTAAAAACAggACTCTGCTTCGGCGCCACCGCATCCCTCTCCCTCCGCCCAACGAGGACCAGTACTACACCGTCTATCACTTCAACATCAACCAGCAGATGGCGCTGTACTCCCGCATCTTCTCCATCACCGACTGCGACCTGTTCACCCGGAATTTCCTGAGGAAATTGGGGATGCGACTGAAGTCTCCTGCACCCACCCCAGAAGATCCCTACAGCATCCTACGCAGTAAGatGGAGGAAAGCATGAAGCCCCTGCGCCCATACGAGCGCGCTGACATAATGAAGCAGTTCATGGACCATGACCGGGAGGTCCTGCGCTTCTTCTGCCACTGGGATGACTCGGAGGCCATGTTTGGTGACGGTCACAAGCTCGTGCTGCACTACTTCCTGGCTGACGACACCATTGAGATCCTGGAGGTCCTTTCTGCTAATGCTGGGCGGGATGCTGCGCCCAAATTCCTCCACCGCAGCAAACTGCCCAAGCATGCACCCTCCACCAAGCGCCAGCCTGGTGAGACAACGGACCGCACCGTGCTCAATGTGTTTGGACCGATGGGACAGGGGGGCCGCTACATTCTGGATAGCCGGAAAACCGGCGCTGTTTATGAAGAGTTCTACAAGGACTGTGACCTGACCATAGGAGCGGTCATTAACGTGTGGGGGCGGAAAGTGGTCATCTGTGACTGTGACGGCTTCACCAAGGAGTATTACCGCACTAAATACGGCATCGAGGACTTTACACCAGTGAAGTACAAAGCCCCTCCCGTTCCTAAGAGAACGAGGCAGGTCCCGCCTTACAGTGGCTTCGGCTCTGAGGAGGACTCACTCTGCCTGGAGAGTAATGTGCTGCGATTTGTTGCCAAAATGGTCACCGACAATCCCATTGACAGCGAGAGGAAGTTCATCATCTCCTTTTTCCTTTGTGATGACACCATTTCTGTTTTCGAACCCCCCCAGAGGAACTCAGGCATGGTTGGGGGCAAGTTTCTGGAAAGGGGAAGGATTAAGAAGCCGGGGCAGGAGCAGTTTCAGAGCGATCTGTCGCAGTACTTCAAGGCGCAGGACCTGTATGTGGGAGCCAGAGTGATCTTCAACACACAGGAGTTCCAGCTGGTGGATGCTGATGAATATGCCTTTCACTACATGGAGCAGCATGCGGAGGAGTTCCCCAAGGCAAACATTGGGACCATTGTTAGCAAGCTAAAATCCTTATGCGAGTCCAGAATGAAGGAGATCAAGCAGGCCTTCAGGATGAATGACCCAGGGAACACTGGTGTGATTGCGTATGAACCATTCAGGAACCTGCTGGCTGAGGTTGCAGGTGACCAGCTGTCTGAGCATGAGATCATGGTGGTTGGGCGCCACTATGGTTCCCCAGAGACACCTGGGTCGGATCTGGGCTACCTGCTGTCCCTGGCCCAGGAGCAGCTGAGGAAGAAGCAGTTTGAAAGCTTCCAGCAAATGGTCGACTCCTTCGTGCACGATGACCAAGACAGGACTGGACTGTTGTCTGCTCAGAAATCCAGGACTATTTGCAAGGCCTTCAAACTTCCATTGGCTGATGATCTTCTGAGAGCCACCCTAGCAAAGTTTGCAAACGATAAAGAAGAAGTAGATTACGGTGCTTTCCTGTCAGCGATAAACTGGAGAGACAATCCAGCAccaacccctctctctcagtctcccAACAAGTATGACGTAGACTGGAGCGAAGAACCCACAGGCCCGGCAGTGAAAGGTATCAGCTATCCCATCTTAGTTGAAGATGTCTTTGGCAAACAGGATTAAAGGAGTCTGTCAAAGGACTGTCTCCTGCTGTTAACATTTTAGATGTACGCTTGTGAACTTGCTTTTCTGTGTCTTCAAGCTATGAGTGTCCCTAAATCCCCAAATAAAGATGAATAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 363946 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 816118 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 890137 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 932153 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1611825 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 379203 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 436306 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 475928 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 665425 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 970393 28831756 ~ 28831975 (+) True G72329
AMCG00014704 mRNA upstream 1524 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014705 mRNA upstream 129122 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014701 mRNA upstream 352126 27483088 ~ 27491264 (+) True AMCG00014701
AMCG00014691 mRNA upstream 505734 27321614 ~ 27337656 (+) True AMCG00014691
AMCG00014690 mRNA upstream 863090 26977435 ~ 26980300 (+) True AMCG00014690
AMCG00014703 mRNA downstream 7352 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014708 mRNA downstream 30488 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014711 mRNA downstream 305670 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014709 mRNA downstream 361298 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014710 mRNA downstream 389563 28250926 ~ 28280724 (+) True AMCG00014710
TU90165 other upstream 1519 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 4987744 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9569030 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10394937 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 11374277 16465681 ~ 16469113 (+) False AMCG00014525
TU90175 other downstream 7340 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 441010 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 1990087 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2902988 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 3116853 30978216 ~ 30978825 (+) True G72785

Expression Profile