RNA id: AMCG00014711


Basic Information

Item Value
RNA id AMCG00014711
length 378
RNA type mRNA
GC content 0.49
exon number 5
gene id AMCG00014711
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28167033 ~ 28184530 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAGATCTGAAGAGAGAAGCGAGCATCTGTCACATGCTGAAGCACCCACACATTGTGGAACTGCTGGAGACCTACAGCTCTGATGGGATGCTCTATATGGTCTTCGAATTTATGGATGGTGCAGATCTGTGCTTTGAAATCGTGAAGAGGGCAGATGCAGGATTTGTATACAGTGAAGCAGTAGCCAGCCACTATATGCGACAGATTCTTGAAGCGCTGCGTTATTGCCATGACAACAACGTTATCCACCGAGATGTAAAGGTTGAACTTCTCACCATCTCTGCCAGGGAGCTGAAAGGCTACTGTAGGCTTGAAGATGGGGTAGTGAATGAAACATCTACCCACGGGGCTATGGCACGCGGAGTGGAGCGTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90084 lncRNA upstream 687589 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 1139761 27026775 ~ 27027272 (+) True G71995
TU89956 lncRNA upstream 1213780 26952296 ~ 26953253 (+) True G71963
TU89946 lncRNA upstream 1255796 26904877 ~ 26911237 (+) True AMCG00014687
TU89834 lncRNA upstream 1935468 26231219 ~ 26231565 (+) True G71859
TU90207 lncRNA downstream 56036 28240566 ~ 28297484 (+) True G72169
TU90212 lncRNA downstream 113139 28297669 ~ 28300813 (+) True G72173
TU90255 lncRNA downstream 152761 28337291 ~ 28341717 (+) True G72208
TU90338 lncRNA downstream 342258 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 647226 28831756 ~ 28831975 (+) True G72329
AMCG00014708 mRNA upstream 248110 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014703 mRNA upstream 287278 27868715 ~ 27879755 (+) False AMCG00014703
AMCG00014706 mRNA upstream 305670 27843390 ~ 27861363 (+) True AMCG00014706
AMCG00014704 mRNA upstream 325167 27835519 ~ 27841866 (+) False AMCG00014704
AMCG00014705 mRNA upstream 452765 27703084 ~ 27714268 (+) True AMCG00014705
AMCG00014709 mRNA downstream 38131 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014710 mRNA downstream 66396 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014714 mRNA downstream 145267 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014721 mRNA downstream 222687 28407217 ~ 28441529 (+) True AMCG00014721
AMCG00014722 mRNA downstream 260446 28444976 ~ 28450107 (+) True AMCG00014722
TU90175 other upstream 287233 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 325162 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5311387 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 9892673 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 10718580 17403511 ~ 17448453 (+) False AMCG00014553
TU90214 other downstream 117843 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 1666920 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2579821 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2793686 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2795040 30979570 ~ 30980252 (+) True G72786

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000009_02682050_02707583.mRNA True 941 mRNA 0.39 6 CI01000009 2681608 ~ 2707623 (-)