RNA id: AMCG00014715


Basic Information

Item Value
RNA id AMCG00014715
length 3607
RNA type mRNA
GC content 0.53
exon number 17
gene id AMCG00014715
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28289355 ~ 28315398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCATTCCACAGGCCAGTGGAAGGTGTCGGTTAAAAAGGCTCGAGCCGAGTACAGAGACGGACGTACgtataattaaaggaaaactaaatatttatctttatttgtatatacatatacacacttcTATTAATAATTCGAAATACATGAGTCTGGGACCGTGAAGAGAATCGACATAGGAACGAGGAAAACCGAAACGACGAAAGAAAACCATCATTGAGAAGTATAtcgaaaaaagaaaaggctttcTCTCTCAACGAAAATCAATCCTCCTTATTCTTTAGTTATGAGTCATGTGGCCGTCGAAAATGCACCCAGCCTAGACCAGCAGCTTGCTGGCCTAGACTTGAACTCCGCAGCTGACGGACAGGGCGGAGGCGGCGCTGGCAGACGTTACATTCCACCTCATTTACGGAACAAAGAGGCATCCAAGAATGATTCTCCTGGTTGGGACAATGGACGCAGCAATGGTTTTGTCAACGGATATCACGATGGCAGGGATAATCGCATGAATGGAGACCGTGGCAACTATGGAGGAAGAGGAGCCACCCGAGGTGACCGAGGTGACCGAGGCGGGCGTGGCGGGTTCCGTGGAAACAGAAGTGGTGGCTCTTTTAACCAGTCGCAGCCAATGCAGAACTCAGGACAGTAGTGGATGGAATGCTTCCAAAGACCCCTACACTAGCTTTGGAGGGCGTACTGATAGAGGCAAATCATCCTTCTTCAATGACCGTGGATCTGGGTCAAGAGGAAGTGAACTCTTCTCTGGAAGCAACACAGGGATAAACTTTGAGAAATACGATGACATTCCTGTTGATGCCACTGGTAATGAATGCCCTCCACATATTGAAAGTTTCTGTGACCTTGAAATGGGAGAAATCATCATGGGCAATATCAACCTTAGCCGTTACACTCGCCCTACTCCAGTCCAGAAATATGCTATTCCAATCATCAAGTCAAAGAGAGACCTAATGGCTTGTGCTCAGACAGGCTCTGGGAAAACCGCAGCGTTCCTGCTACCAGTGCTGAGTCAGATTTACACAGAAGGCCCAGGAGAAGCACTCCAAGCTGCCAAGTCCAGCGGCCAGgaaaatggaaaatatggaCGCCGCAAACAGTATCCAATTGCTTTGATTTTGGCTCCCACTAGAGAGTTGGCATTACAAATCTATGATGAAGCCAGAAAGTTTGCATACCGCTCCAAAGTGCGACCTTGTGTGGTGTATGGTGGGGCGGACATTGGGCAGCAGATTCGGGAACTGGAGCGAGGATGTCATCTGCTGGTTGCAACACCTGGACGTCTTGTGGACATGATGGAGAGAGGAAAGATTGGCCTGGATTACTGCAACTACTTGGTGTTGGATGAGGCTGACAGAATGCTTGACATGGGGTTTGAGCCTCAGATTCGCCGTATTGTGGAGCAGGACACCATGCCTCCAAAAGGACTGCGTCATACCATGATGTTCAGTGCTACCTTCCCTAAGGAAATCcagATCCTTGCCCGTGACTTCCTGGAGGAGTACATCTTCTTGGCTGTTGGTCGTGTTGGCTCCACATCTGAAAACATCACCCAAAAGGTGGTTTGGGTAGAGGAAAGCGACAAACGGTCCTTCCTGCTTGATCTCCTTAATGCTACAGGCAAAGATTCTTTGACCCTGGTGTTTGTGGAAACCAAGAAGGGTGCGGATGCCCTGGAGGACTTCCTGTACCGTGAAGGGTATGCCTGCACCAGCATCCATGGAGACCGCTCACAGAGAGACCGAGAGGAGGCGCTTCATCAGTTCCGCTCAGGCCGCTGCCCCATCTTGGTTGCCACAGCTGTGGCTGCTCGTGGATTGGACATCTCCAATGTGAAACATGTCATCAACTTTGACCTGCCAAGCGATATTGAGGAGTATGTCCACCGTATTGGTCGTACTGGCCGTGTCGGAAACCTTGGTCTGGCTACATCATTCTTCAatgagaaaaacagcaacataacCAAGGACCTCCTTGACATTTTGGTTGAAGCCAAACAGGAGGTTCCATCTTGGCTGGAGAACCTAGCCTATGAACAGCAGCACAAGACGACCACCCGTGGCCGTTCCAAGAGGTTCTCCGGAGGGTTTGGTGCCAGGGATTACCGTCAGACCAacagtggcagcagcagcagctttgGCAGCCGTGGCGGTCGCAGCGCTGGTGGCCATGGAGGAAACCGAGgatttggtggtggtggtgTGTCTTTGTTCCTAATCCCCCCTGTCCTCGCCTCCTGGGCCTGTGCCCGCTCCTGCCCTGCCCGCTGCACCTGCACACAGGAGAGgagctgtgcagtgctgtgtgacCGCGCCGGCCTCCCCGACCTGCCCAAGGAGTTCCCCTGTGAGGCGGCCTCCATCAACCTGGAGAAGAACAGCATCAAGTTCCTGTCGGAGAGGGCTTTCGGGACCCTGCCGTCCCTGCGCTCCTTGTCGCTGGACCATAACAACATCTCCTTCATCACACCGGGAGCCTTCAAGGGGCTGCCCAACCTGGTGGAGCTGAAGATGGCCCACAACGAGTACATCCGCTACCTGCACACGCGCACCTTCACCTCCCTCAAGCGCATGGTGCGGCTGGACCTGTCTGACTGCAACCTCTTCAACATGCCCGACCGCATCTTCCTGGAGCAGGCAGCGCTCCGGGAACTCCTGTGCTTCCAGAATAATTTCCGCCGTATTCCTGGAGCCATCCGCGGCATGGAGAACCTCACCCATGTCTACCTGGAACGCAACAAGATCGAGGCTGTGGCCTACAACTCCCTGCAGGGCCTTGCCAAACTCAAATACCTGAACCTGCAGGAGAACCGCATCAATGTCATCCATGACCAGGCCTTCCAGGACTGTCAGCATCTGGAGAACTTCTACCTGAATGACAACCTCCTGTCAGACCTGCCCCGGGATTCCTTTAAAGGGCTGCGGCGgctcaagatgctcaacctcgGGGGAAACGTCCTCACCAATGTCTCCAGGACCTGGTTCGGTGACCTGATGGAGCTGGAGATTCTCTACCTGGACCGGAACCAGATTTCCTTCATTGAGGAGGGGGCCTTTGAGAACCTCACCAGCCTCATGTCCCTCCACCTCAACAGCAACAACCTGACCACCTTGCCTTTCTCAGTCTTCCAGCCCGTCTACTTTCTGGGGCGGCTCTATCTGTTCCGCAACCCCTGGAACTGTGACTGTGGGTTGGAGTGGCTCAAGGAGTGGATGGAGAGCTACAACCTGGTCAGGGACATCCCCTGCGTCTCCCCCTCCTCCGTGGCTGGCCTGGACCTCTGTGAGGTGGTCTTCCCCCGATCCCCAGATGGCCTCTGTGTGGACCCAGCTGAGCTCAACCTTACCTCCTTTGCTCCCACGGCAGCCGAGGCCCTGCACTCCACCACCGAGAACAAGTTCAGCAGCCTCATCTCCAGGCTCATGCAGCAAGAGCTCCACGACGGGCCCTTCAACTCCACCGTGATATTCAGGAACAACTCCCTCATGGATGAATTGGATAATCGGGTGTCTGCAGCAGCCATCCCTTTTAGTGCCAGCAAACTGCTCTGTGTAGGGGTCgtacatttccttttcaaaggATGTCTATAG

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K11594 DDX3X, bel; ATP-dependent RNA helicase DDX3X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90174 lncRNA downstream 427980 27856739 ~ 27861375 (-) True G72146
TU90167 lncRNA downstream 451428 27836339 ~ 27837927 (-) True G72139
TU90102 lncRNA downstream 758712 27530296 ~ 27530643 (-) True G72089
TU90058 lncRNA downstream 870310 27418816 ~ 27419045 (-) True G72049
TU90042 lncRNA downstream 946605 27335695 ~ 27342750 (-) False AMCG00014692
TU90346 lncRNA upstream 263011 28578409 ~ 28578734 (-) True G72280
TU90377 lncRNA upstream 331097 28646495 ~ 28646811 (-) True G72305
TU90378 lncRNA upstream 340168 28655566 ~ 28655765 (-) True G72306
TU90379 lncRNA upstream 342679 28658077 ~ 28658299 (-) True G72307
TU90391 lncRNA upstream 358983 28674381 ~ 28766089 (-) False G72317
AMCG00014713 mRNA downstream 68869 28219392 ~ 28220486 (-) True AMCG00014713
AMCG00014712 mRNA downstream 84394 28061628 ~ 28204961 (-) True AMCG00014712
AMCG00014707 mRNA downstream 526942 27717966 ~ 27762413 (-) True AMCG00014707
AMCG00014702 mRNA downstream 780213 27492028 ~ 27509142 (-) True AMCG00014702
AMCG00014697 mRNA downstream 806675 27470289 ~ 27482680 (-) True AMCG00014697
AMCG00014716 mRNA upstream 25753 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014717 mRNA upstream 172231 28487629 ~ 28490563 (-) True AMCG00014717
AMCG00014719 mRNA upstream 178708 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014718 mRNA upstream 179109 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014730 mRNA upstream 614967 28930365 ~ 28951352 (-) True AMCG00014730
TU87063 other downstream 16626862 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 17491208 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 18972188 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 19905131 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 20130765 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14341 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 1073892 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3947769 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 4282064 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 4282064 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063286 False 4367 mRNA 0.53 18 NC_007117.7 59832800 ~ 59850404 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_02601021_02609375.mRNA True 2374 mRNA 0.53 19 CI01000009 2601021 ~ 2609377 (+)