RNA id: AMCG00014717


Basic Information

Item Value
RNA id AMCG00014717
length 918
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00014717
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28487629 ~ 28490563 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTATGAGGTGAAGAGGGAGAGTTTTTCCCGGGAGGAATTCTGTCAGATTATGGAGGAGACTGGGAGAAGCTGGGCAAAGACCCATGAAAATCTGCTGGAGTACTACAAGGATCTGATTGAAAGGAGAGACTCATCAAGGAGGCAGATTGCTGAGCAGGAAGAAAAGatACAAATGCTGAAGGAAAAGGGGAATTATCTGACAAAGATAAAAGACCAGATCCTGGAGACAGTGAGATACATAGAGCGGAGAATGTTCCTTACATCAGAGGAGATCAGAAGGAGGCAGAAGATCATCTCTGAGGAGCTGCAGAGGAAGCAGCTTCTGCTCAATCACCTGGAGGAGAAGCAGATGAGACATGAGGCAATGGAAGCTGAGGTGGAAGCTCTCCGCAGGCAGCTCTATCTCTCACTGAGAAAGAAGTACGGTGGCCACAGCAGGTCAATTGACCATTGACCAGCCCCGACTCTGAGCATATGGTGGCCATTCCAGATACAAGACAAAGCTGCAAGAGatcctgaaagagagagagagagagagagagagagagagagagagagagagagattgcttAATGGACGGGACAGAATGGGCCGCTGAAGAGACTGAATTACCTCCCAGTTAACAATTTTAAGTTCCCAGAACCTACGTTTGTTGTAGGTTTTAGGAGAAAACATTCCCACGTTTTTCAGACGTTCTTATGTTATGATGATTATGTGCTCTTATGCCTCATACTGCAACATCCTATACTATTACTTCAAAGAGAACAattaactacaaaaacaaatgaactagcacatttctgtattttgtagaGGCTATGGGAAGCACCTGAACAAAACTTTGATAACACCCCTGTCACACTTcacaactgtaaaataaatcaaccgTAACTGTCTAACATTGCTATCTAAttcttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90174 lncRNA downstream 626254 27856739 ~ 27861375 (-) True G72146
TU90167 lncRNA downstream 649702 27836339 ~ 27837927 (-) True G72139
TU90102 lncRNA downstream 956986 27530296 ~ 27530643 (-) True G72089
TU90058 lncRNA downstream 1068584 27418816 ~ 27419045 (-) True G72049
TU90042 lncRNA downstream 1144879 27335695 ~ 27342750 (-) False AMCG00014692
TU90346 lncRNA upstream 87846 28578409 ~ 28578734 (-) True G72280
TU90377 lncRNA upstream 155932 28646495 ~ 28646811 (-) True G72305
TU90378 lncRNA upstream 165003 28655566 ~ 28655765 (-) True G72306
TU90379 lncRNA upstream 167514 28658077 ~ 28658299 (-) True G72307
TU90391 lncRNA upstream 183818 28674381 ~ 28766089 (-) False G72317
AMCG00014716 mRNA downstream 107576 28341151 ~ 28380053 (-) True AMCG00014716
AMCG00014715 mRNA downstream 172231 28289355 ~ 28315398 (-) True AMCG00014715
AMCG00014713 mRNA downstream 267143 28219392 ~ 28220486 (-) True AMCG00014713
AMCG00014712 mRNA downstream 282668 28061628 ~ 28204961 (-) True AMCG00014712
AMCG00014707 mRNA downstream 725216 27717966 ~ 27762413 (-) True AMCG00014707
AMCG00014719 mRNA upstream 3543 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014718 mRNA upstream 3944 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014730 mRNA upstream 439802 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014731 mRNA upstream 505373 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014732 mRNA upstream 533215 29023778 ~ 29031908 (-) True AMCG00014732
TU90285 other downstream 155147 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 16825136 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 17689482 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 19170462 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20103405 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 898727 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 3772604 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 4106899 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 4106899 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 4311295 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile