RNA id: AMCG00014721


Basic Information

Item Value
RNA id AMCG00014721
length 5447
RNA type mRNA
GC content 0.55
exon number 31
gene id AMCG00014721
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28407217 ~ 28441529 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cacacacacacacacacacacacacgaccaGTCTCCCTTCACCACCACACTCGTATGCACCTTGTGAttggttgctgttgttgtaaCGCCGCTGTTTCAGTTCCGTATCCGGGTCTGCAGTTCCAGCGAATCTGTAATCACTTCCTGTCGGAGAGCAATGATGGCGGGGCTGAGATTGTGAGCTTTCGTTTTCTTTACTACAGTAATCATCAGGTATTCGCCGGGCAGATGCATGGGGCGAAGACACCTCGACCCCGCCAAGACGCACTTAAACACCAAAGGGACTGAGTGAAGCTTCCGAGGGTCTGTTCGTCTCCCCAGCCACCCGGGAAAAGTGAGAGTCGAGAGGTTTCTTCTCCTGTCTTCGCTTTCTAGCGCTAAGTGCCCGGggttttctagtttttttttttcttcaataaaatGGCTCCGGTGCAGATCGGCCCAGATGGCCAACTGGTGCCGACCGGGGGTCCCACCTCGGCACCGCAGCCCCCTCCTCCAGGGGCCCCCGCAGGGACTCCGGCGACACACGGGGTCCGGCTGAGCTTGCTGATTGAGTTTCTCCTGCAGAGGACCTACCATGAAATCACTCTACTGGCGGAGCTcCTTCCCAGGAAGACCGACATGGAGCGGAAAATCGAGATTGTGCAGTTTGCCAGCCGGACACGGCAGCTCTTCGTCCGCTTGCTGGCTCTGGTGAAGTGGGCCAGCAATGCAGGGAAGGTGGAGAAGTGTGCGATGATCTCTAGTTTCCTGGACCAGCAGGCCTTCCTGTTTGTGGACACTGCAGACCGGCTGGCGTCATTGGCAAGAGATGCCCTGGTCCACGCTCGCCTGCCCAGCTTTGCCATCCCCTTTGCCATCGATGTGCTGACCACTGGCTCCTACCCTCGTCTGCCTACCTGCATCAGGGACAAGATCATTCCTCCTGATCCCATCACCAAGGTGGAGAAGCAGTCCACCCTCAGCCAGCTCAACCAGATTCTCAGACACCGCCTGGTCACCACTGATCTGCCACCCCAGCTTGCCAACCTCACCGTAGCTAATGGGCGTGTGAAGTTCCGGGTGGAGGGCGAGTTCGAGGCCACCCTGACTGTGATGGGCGACGATCCAGACATTCCCTGGCGGCTTCTCAAACTGGAGGTCTTGGTGGAGGATAAGGAGACGGGAGATGGCCGGGCCCTGGTCCACAGCATGCAGATCAATTTCATCCACGAGCTGGTGCAGTCCAGGCTTTTTGCCGACGAGAAACCACTACAGGACATGTACAGCTGTTTGCATTCCTTCTGCCTGTCACTGCAGCTGGAGGTGCTGTACTCCCAGACCCTGATGCTGGTCCGCGAGCGCTGGGGTGACCTTGTTCAGGTGGAACGCTACACCCCTGCCAAGTGCCTCACTCTCTCCGTGTGGAATCAACAAATCTTGGGCAGGAGGACGGGCACTGCGTCGGTGCACAAGGTCCACATCAAGATTGACGAGGCTGATGGTTCCAAGCCCCTACAGATCTCCCACGAGCCCCCACTGCCAGCCTGCGACTCCAAGCTCATAGAGAGAGCCATGAAGATTGATCATCTGTCCGTGGAGAAGCTGTTGATAGACAGTGTTCACGCCCGCTCCCATCAGAAGCTGCAGGAGCTCAAAGCCATTCTGAAGAGTTACAACCCCGGTGATAACTCCTTCATTGAAACCGCTCTTCCCACTCTGGTCATTCCAATTCTGGAGCCCTGTGGGCGTTCTGAGTGTCTTCACATATTTGTTGACTTGCATTCAGGAATGTTCCAGCCAATGCTCTATGGAATCGAGCAGTCAACCTTGGACGACATTGAGAAATCCATCAACGACGACATGAAACGCATCATCTCCTGGCTGCAGCAGCTCAAGTTCTGGCTGGGCGAGCAGCGCTGCCGGCAGTCTGTGAAGCACCTCCCCACGGTGTGCTGTGACACCCTGCACCTCTCCAACGCAGCCTCTCACCCCACCGGCAGCCTTTCCAAACACCGCCTCTTCATCAGGCTAACACGCCTCCCGCAGTACTACATTGTGGTGGAGATGTTCGATGTCCCCAGCTGCCCCACGGAACTGGAGTACAAGTACTACTTCCTGTCGGTGAGCCTGCTGGAGGGCGAGGATGGCCCCCCCAGCGCCCAGCTCCTGCAGCAGTTTAAACCCAACCTGGAGGAGCTGGTCCTAAACACCACACCTGGCCGTGCAGCCAAACCAGGGGCCAAGAGGAAGTTATCTGGGGACCAGGGAGCCATAGAGCCCAAGAAACCCAAGCGCACAGGAGAGATGTGTGCCTTCAACAAGGTCCTGGCCCATCTTGTAGCCATGTGTGATACCAACATGCCCTTCATTGGCCTGCGATCTGAGCTGTCCAACATGGAGATTCCCCATCAGGGCGTGCAGGTGGAAGGTGATAGCTGCAGCCACGCAATTCGCATTCTCAAgatTCCCCCTGGAAAAGGCATCAGCGAGGAGACACGGAAGGTTCTGGAACGCTCCCTCCTAGACTGCACCTTCCGCCTCCAGGGCCGCAACAACCGCACTTGGGTGGCCGAGCTGGTTTTTGCCAACTGCCCCCTCACCAGTACCTCCAGCAAGGAGCAAGcCTCCACACGGCACGTTTACCTGACTTACGAGAACCCCCTGTCGGAGCCAGTGGGGGGGCGTAAGGTGGTGGAGACGTTCCTGAACGACTGGAACAGCATCGCCCAGCTTTACGAATGCGTCCTGGAGTTCGCACGCTCGCTGCCAGACATGCCCTCCTATTTAAGCCTCTTCTCCGAAATCCGCCTCTATAACTACCGCAAGCTAGTCCTGTGCTATGGCAGCACCAAGGGAAGCTCGATCACCATTCAGTGGAATTCAGTGACCCAGAGGTTCCACATCTCCCTGGGCACAGTGGGGCCCAACTCAGGCTGCAGTAACTGTCACAACATCATTTTGCACCAGCTGCAAGAGATGTTCAACAAGATACCTAACGtggtccagctcctccagGTGCTGTACGACACCCAAGCCCCACTCACCGCCATCAATAAACTGCCCACCGTGCCTATGTTGGGTCTGACCCAGAGGACCAACACGGCATACCAGTGCTTCTCCATCCTGCCCCAGTCGCCCACACACATCCGTCTGGCCTTCCGCAACATGTACTGCATCGACATCTACTGCCGCAGTCGGGGGGTGGTGGCCATCAGGGATGGGGCCTACAGCCTATTTGACAACACCAAGATTGTGGAGGGCTTCTACCCAGCACCAGGCCTCAAGACATTCCTCAACATGTTTGTGGACAGTAACCAGGACCCACGCCGGCGTTCTGTGAATGAAGACGACAACCCCCCCTCGCCTGTGGGGGTGGATGTGATGGATGCGCTGATGACCCAGCTGCAGACCCAGGCCTCTCAGGGGCAGCCGCAGCCGTTCGGGAAGCAGCCGGGAGGGGCTGGAGGCTATCCCATCACATCGCCGCCCGCCTCCTACCACGCAGGGGTGGCCCCTTCGCCTTCCATGATGCCCACACAGTCGCCAGGGAACATCCACGCAGCCAGCTCCCCTAGCGGTGCACTGCGGGCCCCCTCGCCGGCCTCGTTCGGCCCCACCCcgtctccctcctctctggggATTTCAATGGGGCAGACTTCCAACTTTGCCAGTCCGCACGgCACTCTGGACCCCAGCTCTCCCTACGCCATGATGTCTCCCAGCCAGCGCACGGGAACGTGGCCGGGCTCCCCACAGGTGTCCGGCCCCTCGCCTGCAGCACGCATGCCTGGGATGTCTCCAGCCAACCCCTCCCTGCACTCGCCCATTCCCGATGCCTCTCATTCTCCCCGTGCTGGAACCAgtTCCCAGACGATGCCCACGAACATGCCTCCGCCTCGAAAACTACCTCAGCGCTCCTGGGCGGCCTCCATCCCCACCATCCTAACCAACAGTGCCTTGCACGTCCTACTGCTGCCCTCACCCACGCCCTGCCTGGTTCCTGGCCTGGCGGGCAGCTACCTGTGCTCCCCGCTGGAGAGGTTCCTGGGCTCGCTCCAGATCTTGAACTCCAGCGAGCCGGGGGTCATTACATTCAAGACAGAGGTGCTGAAGTGCCGAGTGGCGCTTAACCCCAAGACCTACCAGACCCTGCAGCTGAAGGTGACCCCGGAGAACACTGGGCCCTGGTCCCAGGAGGAGCTGCAGGTCCTGGAGAAGTTCTTTGAGACGCGGGTTGCAGGCCCACCCTTTAAGTACAATACACTAAATGCCTTCACCAAGCTACTGGGGGCTCCCACCCACATCCTCAGGGACTGTGTGCGCATCATGAAGCTTGAGCTGTTCCCAGACCAGGCCAACCAGCTGAAGTGGAATGTGCAGTTCTGTCTGACCATCCCACCCAGCGCGCCTCCGATCGCTCCTCCTGGGACCATCGCCGTAGTGCTCAAATCCAAAATGCTGTTCTTCCTCCAGCTGACCCAGAGGCTGCCCGTACCCCAGGAGCCCATCAGCATCATCGTGCCCATCGTGTACGACATGGCCACAGGCCTCACGCAGCAGGCCGACATCCCGCGCCAGCAGAGCTCCTCGGGGGCGGCCGCGCTCATGGTCAGCAGCATCCTCAAGAGGTTCAACGAGATGCACCCCCCGCGCCCGAGTGAATGCACAATATTTGCATCAGTTCATGAACTCATGGCAAATCTCTCACTGCCCCCCGGTGGACGGCCATAGCAGCGCATCTCTGGGTCTTCAAAACCACATGGAGGGTGTAATTCTGCAGTGAACCGTGGAATCCAGCACACTGGCAGACTAAATCCAGTCTGACATTTCTCCTCAAACCACAGTTTTTGGACTTAGCTGACTCTGGTGGACATGTTTCcactgaagaaaaaattaaaaagggagTGCTAAAGAGTGAccatcaaacactttttttaaatgaagaaagaaaaacaaacactcaatCTATGGACTACAGGCAGACACATTCCCTTGGGGGAATCCAatcataaattattttaaagagctAAACAAAAactatggatttattttttcagagatGCACTTcttaaataataactaaaataaaatgtaataaaagatgAGAGGTTTGTTTACCTGCAgttgtacattgttttataaGCAGAATTTTGAGGCAAATGGCAGAAACTCTTTGCAAGAAACTTTATTCaactttcttcttctcttttgttttataCTGCAAGAAACCAATTTTATTGAGGTATTGAAGATGCATACTTTGTTAGTActtgtaaatgtgtatttttattttctctttttgatGTCTTGGCTTAAATTCAACTCTTTTCAGTTAAGCCCGTCACTTTGAATACTGTAAAACTGTGACAAACTTTATAATTAAGCCGTATTTTATTATGACTGCTTTGGAGTCTTTCCAGAAGAATCTGAGACATGTTGTCTAGGTCTCTGATAAATACTat

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15156 MED14, RGR1; mediator of RNA polymerase II transcription subunit 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90255 lncRNA upstream 65500 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 106404 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 109733 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 927773 27475064 ~ 27479444 (+) True G72072
TU89992 lncRNA upstream 1379945 27026775 ~ 27027272 (+) True G71995
TU90338 lncRNA downstream 85259 28526788 ~ 28578733 (+) True G72273
TU90404 lncRNA downstream 390227 28831756 ~ 28831975 (+) True G72329
TU90400 lncRNA downstream 394753 28836282 ~ 28837910 (+) False AMCG00014729
TU90416 lncRNA downstream 477447 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 539593 28981122 ~ 28985576 (+) True G72353
AMCG00014714 mRNA upstream 74749 28329797 ~ 28332468 (+) True AMCG00014714
AMCG00014710 mRNA upstream 126493 28250926 ~ 28280724 (+) True AMCG00014710
AMCG00014709 mRNA upstream 171302 28222661 ~ 28235915 (+) True AMCG00014709
AMCG00014711 mRNA upstream 222687 28167033 ~ 28184530 (+) True AMCG00014711
AMCG00014708 mRNA upstream 488294 27891851 ~ 27918923 (+) True AMCG00014708
AMCG00014722 mRNA downstream 3447 28444976 ~ 28450107 (+) True AMCG00014722
AMCG00014720 mRNA downstream 14666 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014724 mRNA downstream 141940 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014723 mRNA downstream 149549 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014726 mRNA downstream 254282 28695811 ~ 28766090 (+) True AMCG00014726
TU90214 other upstream 103144 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 527417 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 565346 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5551571 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10132857 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1409921 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 2322822 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2536687 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2538041 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2548534 30990063 ~ 30996363 (+) True G72787

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073381 False 4943 mRNA 0.49 29 NC_007120.7 34397843 ~ 34423999 (+)
grasscarp (Ctenopharyngodon idella) CI01000009_03313112_03329470.mRNA True 3844 mRNA 0.51 27 CI01000009 3313112 ~ 3329510 (+)