RNA id: AMCG00014726


Basic Information

Item Value
RNA id AMCG00014726
length 4242
RNA type mRNA
GC content 0.43
exon number 21
gene id AMCG00014726
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28695811 ~ 28766090 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGACCAGATGGCAGCGCCAGGAAGCTAAAACCTCCAGTGCACAGTGTCTCCAGCAGGCCGGGCTTCACCGCACATACTTTGTTCAGTCAGCATCTTCAACTGACTGTGAGCGGAAGCGACATGAGACGGGCCTCCGAGAACAGAACGAATGGCATGAAAAATGACAGCAAGCCGACCCCCTGGGAGAAAtatccctccccccctccaGCACGCGGTTCAGGGGATCGCAATGCAGTGGGCCTGAATTTGATCAAGGATATGTGGGAGAGAACGGCAGAGATAGGTGGTGAGAGGACCTCTCCCAAGGTCCGTCACGCCATGAAGAGGAGCCAGCTGGAAACCTGCACGAGATCCTACATCACAAGGGGTGTGCCACCCGGAGGAATGTTGAAAAGTAtccctgtgtgtgtcctgcTGGCCATCGCCTGCTGTCATGCTGAGAAGAAGGAGGCTCTCACAGAACACATCCGCTCTGAAAGTACAGAGGATAGATCGCCTGGCTATGTTCCCGAAGAGGCCCTAGGAGTGTTGCACAGCAAGAGACGTGCAATGTGCAAcTTTAATGAGCTTCTGACAGTGCTATCTAATGATGATGTTCAAAGAGATGAGGGCCACATGGGCAGCAGAGGAGCCACAGGAACTATACACTTCTCAGAAGGCATGTTCGCTCTTTCTGCGGCCAAGAGCCCAGCAGAATCAACACCAATTTACACCAATCTAATCGGAGTCATCAAAATCTCCCAAGTCATCGAGATTCGTTCTCAGATCAATCCGGGAGCCATGCTGAGGAATATAGAGATAGTGAATCAGAATGACCCAGCATCGTTTGGAGAGCAGCAATTAAACCGAAAGGAACAGCTGCTGTGTCTTGAAAAAGAGACTGATTTGATGCAGGAGGTGAAGAGCAAGTCCAAGATCTGTGCCAATGTGTTCTGTGGGGCCGGCAGGGAGTGTGCCGTGACTGAGAAGGGAGAACCTACCTGCCTGTGCATTGAGACCTACCGCAACCACTGTGAGCTTCACCGTGATGCCTGTCTGACTGGGCTGAAGATCCAGGTTGCCCATGATGGTCATTGTGAAGagAAGAAGACTGAGAAAATAGCTGCAAGCCCAATTGTGTGCTACCTCGCCGATCGCAACGAGCTGCGCAGCCGTGTCATCGAGTGGCTGCAGACCGAAGTGGTTCCTGATGGTTGGTTCTCCCAGGGCTCCAACTACTCCGACATCCTTTACAGATATTTCAAGAGCTACGACAATGGTGACAACTACCTGGACTCAGCCGAACTCCTGAAATTCATTCAGCACAACGAGACCGTTGTTAACATCTCCTCCTACATGGACGAGGAAAATAACCGCCTGCTCCGgaGCCTGTGTGTGGATGCCCTCATTGAGCTTTCAGATGAAAACGCTGACTGGAAACTGAGCTTTAACGAGTTCCTCAACTGCCTCAAGCCTGGGTTCAACCCTCCAGAGAAGAAGTGTGCCCTTGAGGACGAGACCTATGACGATGGCGCGGAGACACAGGTGGAGTGTAACAGCTGTGTGTGCGCCTGTGGAAACTGGGTGTGCACTGCCATGACGTGCAGTGGTAAAGATAAGCAGGCCGCCCCCGTGGTGGACGATGAGCAGGACGAGATGACCGAGGAGGAATGGACCAGGCATGTGTCAGAGCTCAACAAACACCAGGAAACCGTGGAGAAGACCAAGAAAGCAACTACAAAGGACATATAAGAAGGCTTgcaaaggaagaagaaaaagtaaaatgaaaaaactcCAATCATACCTTCCTTTCCTCAAGAAGTGCAGGCCGGCGCTTGAATCTCGTACTGTTGCTAAAAGAATTACctagtactttttttttttttttttatcattattattgtattatgttggtttgttcgtttttttcaTTCGTTATCAATGGGGTAATAATCCACAACTTGTGTTCTGTGTAAAGTGTTGTATTCTTTTTGATGGAATCACTTGGTGCTGAGGTGTGAGATCCATCGACCAGATGacagttgtttgttgttgttgtttttttaaactgccgTAAATTTAAACACTACAAGTGAGGTGGGGAGATGGAGGACCATCGCACAATTAGGAATGCCATCTTAGTTTCCTGCTGCTTTGCATGATCGGATACCGATTTTCTACTGCACCATACATTTCCTACTAAGTAATAGCGCATGTTGTGTATAGTGACTTATACAGTATGTTTGCCATGAAAAGCAACAGTCTCCTACATATTAGAAGAAAGCTAATATAATTTCTGTCAAagaatttagttttaaacattataactTCCCATAAATCAGTCAATCGTGCACGTCAAGAACAGGTCTGTTGTTAGGCTAGAGgcataaatatactttttaaaagaatgaCCTGGTAGCCGATAAAATCAAGGTGATCTGAATTGCGGACACAGTCAACTGAGTAACCACCTACTTTACATTCCTTATTCAGATGTATCCTAACCagcaaaattaatcaaaataatgtagAATCTAGAATAATCTAAAATTGTGTATCTACATATAAAaggaaattgtattaaaatgcttaGGCTTAAATGCTCAATACTGTAAATTAGCCAGTACTGTACCAGTTACCATGTCTAAATACACTGTATGTCAATTGAAGACTAAAGACATTAGGTTGACGTGGACTTGGCAGGATGGAAGACGCAGCAAAACCAAATATTAAGCATTTGCAGAGAAAATGTATGGAGAAGCAAGCAGACACGTTCTGCCTGGGTTTGTTGCCTTCAGGGAGCAGATCTGTAGGATTAGATTGAAGCATTGACAGATTGGGAGAGATCTAAAACGTCTCTGTTCACACATCTTCAGGGCCGGTGGTTATGCTCTGGCTGACTCCCATGACAGATGCAAGTTCAAGTACTACTAAAACCTACGCTGACATCCATTGCTCTGTCGGTTATATAGTTCATGCAGAGTTATTCGCAGTTCTTCCCTGTCACTTACAATGGCACATGTTTCACGAAGGTGcgatttctttttttcttacactttgatagtatttttgcatttatttttataattttgtagtAGTCTtcgtattttatttaaattggattGTAACTCAGATGGCAATCTTAAGCAAGTACAGTACAAATGCCTACTGTTTTACACCACAAAAGGGGGCATAGTTACAAAGAATGAAAACTGCCACAGTTATGCTTTATGAACCTACCTGCTAGGGTTGTCTGGCtgtattgctttgtatttcaaaCACTTTCCACTTGTTTTATCCACATACAGTGTTACAAGGTGTTGATTGATTTAGGCTCATAGCTACCATTACTTTTTGTCAGCTTTTGCGTCATTCTTTGTGTTCAGTCAAGGCTGTTTAGTCATTTGTCACATCACACAGATGTCAGTGTATTGGGATCACATACTACACAAATGAATGGTTTTCGGTACCTGCTTTTTAAAACCCTTCATCTGCTGTATGTTGCTTCCCGAGTatgacagaaaagaaagaatgtgGGTAAAGAAAAGGGAAACGGACAGAGAGAATCCAAGTGTGAGTTTGGGGATATTTCCTGTGAGTTTGCAAGTACTGAATTGTCTGTCTTGGGGGGTCAAGAGATGGGCACCAAAGAGCTGAACCAGTGTAGGAATGGAAAAAGAGTTGAGACATTGAAACCAAAGCCTGCCATGAGAAGCTGATTGATGTTGTGTAACTCCTCCGGGTAATGCATTACTCTGGACCCAGCAACTacaaaataccttttatttcaatatatatcagTGGATTAGAATCAGTATCAACTCTATAGCATAGATATTTTACGTTGTTAAACTTTACGTTGGATGATTCTACTAATGCATTGTGTATACCATGTGCAGTATCAGTGCcttaaaagaataaagaaaaatcaaaggCTGTTTTAAAGTTCATGACTGAAAAACACCTTAAAATACAACATCTACATCTACAGCTACATGCACGATGGATGTTGGTCCATCTAGCGTTTGAATACAACTTCGGATTGAAAACAGCACAGATATATTTGGCAGTATTACCTTGTACTAGTTGAACTTgactttgatttgtttgtttgattgtttttgtcatgtgaccagcatttaaaccattttgtatTCTTGTAAAGGTTATCACTAGTTTGTTTACTCacttttttgtattcctactgTGTCTTACAGGTATCTGGGGTATACAtgccaataaaaaaatctacaaaaccCATAA

Function

GO:

id name namespace
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23912 FSTL1; follistatin-related protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90338 lncRNA upstream 117078 28526788 ~ 28578733 (+) True G72273
TU90255 lncRNA upstream 354094 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 394998 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 398327 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 1216367 27475064 ~ 27479444 (+) True G72072
TU90404 lncRNA downstream 65666 28831756 ~ 28831975 (+) True G72329
TU90400 lncRNA downstream 70192 28836282 ~ 28837910 (+) False AMCG00014729
TU90416 lncRNA downstream 152886 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 215032 28981122 ~ 28985576 (+) True G72353
TU90429 lncRNA downstream 223517 28989607 ~ 28991299 (+) True G72354
AMCG00014723 mRNA upstream 86624 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014724 mRNA upstream 104851 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014720 mRNA upstream 211961 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014722 mRNA upstream 245704 28444976 ~ 28450107 (+) True AMCG00014722
AMCG00014721 mRNA upstream 254282 28407217 ~ 28441529 (+) True AMCG00014721
AMCG00014725 mRNA downstream 1345 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014729 mRNA downstream 30959 28797049 ~ 28837909 (+) True AMCG00014729
AMCG00014727 mRNA downstream 115827 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014728 mRNA downstream 139811 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014734 mRNA downstream 330039 29096129 ~ 29110638 (+) True AMCG00014734
TU90214 other upstream 391738 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 816011 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 853940 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5840165 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10421451 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1085360 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1998261 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2212126 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2213480 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2223973 30990063 ~ 30996363 (+) True G72787

Expression Profile