RNA id: AMCG00014729


Basic Information

Item Value
RNA id AMCG00014729
length 4126
RNA type mRNA
GC content 0.44
exon number 10
gene id AMCG00014729
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 28797049 ~ 28837910 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCTGGCTACACTTTCCTCCAGACACAGTTACAGCACGTATCCAACAcagctctctctccttttttttcttccctttttctttttttgactGGCTACAGAAAATAATCCCTCTCCTTTAATTACATCTTGCCTGTttgcctccctctctttctctgttctgTGCTTTGGACAACTCTTCAGTTGGAAAGGCGCTCTCTGCCCAGCGGGATGAACGGAGTCTCGCCCCCAGGAGCCGAGACTGGCGAGGAATGAGATCCTTTCAGTTGTGTGTGCGTTTTTGATCATTTCTCCAGAGATGGAGTGAAGACGGCAGAACCAACTGGACTATTATCTTTGCCTTCAAACACGCGCGGTTTCTTCAGGTTGCTCTCACCCCTATTGCATGACTCCatgaagaaaagagagaggcCCAGCTTGATATGGAGGCAGCCCTCAACTGCAGCGACATATGTGACTCCAGGGACTGCACCCTTGACCCCGACATTGACACAGAAGAAGGCTGGAAGGTTCTCCACAAGCTCTGTAGACTCCTCTCTCAGAGTTCTGTCTCGGAGTCCACGATCTCTCCTGTCCTGTGTGCTGTGATGTGGACCTTGCTGTCCTGTGGGATACTGCTAGCTGCCTTCTTCCTGGTCTTCACAATCCGATTCAAGAGCAACAGGATTGTGAAAATGTCCAGCCCCAATCTCAACGTGCTGACGCTGTGTGGGAGCGTTCTGACTTGTTTTCCACAGGCACGGGTCTGGACCTTGTGCATTGGGAGCTCTCTGGTGTTTGGTCCCATCCTGGGCAAGACATGGCGTCTCTACAAAGTGTTCACCCAGCGTGTGCCAGACAAGAGGGTGATCATCAAAGACATCCAGTTGATGGGGCTGGTGGCTGGCCTGATACTGCTGGATATCCTGGTCTTGATAACATGGGGCTTCGCAGACCCAGTGCAGTGTATAAGATCAGTTGGTGCTTTAGTGAAGATCTTCGAAAGGGGCGTCTTTTATTCTGTCTCGCAGTTGGAGTCCTGTGCTTCTCTCTACACCGACGTCTGGATTGTCCTGATCTCTGTACTGAAGGGCAGTCTGCTTTTATATGGCACTTACCTGGCCGGCTTGACCAGCAATGTGAGCTCTCCACCAGTCAACCAATCCCTTACCATCATGGCCGCTGTCTTTCTCATCACTGTGTCTGCTGCTGTGGCCTTCCCTGTTACCCGGCTCCTCTACTCCTGGCCTAACTTGGTCTACAGCTttatctcaggagggattttcaTATGCACTCTGACCATCAACTGCCTTGTGTTTGTACCTCAGCTGATGCAGTGGAAGCAGTTTGAAGATGAGCTGAACCAGACTCAGGCTCAGATGGCAAAATACTTCAGCAGCCCAAGCAAGAGCATTCGCTCCATGTACAGTGAAGATGAGATTTACTACCTCCTGGGGGAGAACAGCTCCATGAAACAGCTTCTAACAGAGAAAAACGCTGTGATCGACAGCTTACAAGAGCAAGTGAACAGTGCCAAAGACAAGCTTATGAGACTGATGTCGGCACACAGCAACAGCGAGGACGATGAGTTCAACTCCGCGGTCATCCTGAATTCGGCCTCCACTCAGGTGACAGAGGTGAAACTGGAAGCCTCTTGGCAAGGGCTCGATTGCATGCAGGTGATAATGCAGCCACCTCCCTCCACAGACACAGCCTGCATCCCAGGTAGTGTGAGCCATTCACAGAAGGAACTAGAATTTTCTTCCGattctgtgaaaaatacaaagcagCCATTGAACAATGACTCAGCTCGTGAAAAGCAAAATTCCAACACAGGTGGTGCTGAAGATATGCAAGAGCAACCTCAGGCTGTTAGTCTGCCAAACAACATTACAGAAACTGAATCACGGCCCTCCTGTGACTTAAGCCCTGCCTTGCTTGTTCAATCCAGTACCACACTTGCAGAAAACTCTGGCTCTCTCAAGGATGAGTCGTTGGCCAACAAGCACAACTACGTCAGCAGTGAAAAGCTGCAGGAGATCCTCCAGGACCTTAGCATAGATGCCGTCAGCTCCCTGAGGTCACCGAACCGGGTCAGAAAAGCTCCAGTTTCTGCAAAGGCCCAAATCCAGTATTACTATTCAAGTATTTCTCCATATATCATGAGGAAAAGGAGACCCCCTTTCAATTCTGCCAGAGGTGGACCCCCTCGATATTGCTTTCCAGGGTCTGTACCCTTATGTCCAGGTCCTGCCATGAGTGGAGATCTCATCGGAACTTGTGGAAGCAATGATGCAACTCCTGAACTCGGAAGCAACACTCTGCCAGTGCAAAATCCCAATTCAAACGTTGTAAACCATTCGTTGATCACCGTCAGCGACGAAGGAGAACCCTCCTCCCATGACTCAAAGACTCTACCTCCCAGATGTGCTAAACACAAAACCAGGCACGGCAACTGTGACCTGCACATAGGATCTGCGCAGGCCCGGAGGTGTAGCATTACCCCTTTTTCAGAGTTCCACTCTCCCCACTTTCCCTCGGAAAAGGAGAACTCGCACGCAGACCAGGAGCGCTATCCGTACGATTATTCAGACACGGACTCCAGTAGCTCTGACGAGAATTATTGCTATTACCACCGGCCATACTGCAGCACCTGTTTACAGAGGCCATACGATTCCACCGAGAGCACCAGCTCTGAAACCTCAGACAGTGAGTTTGCTGCACTTCCAAATCGCTGGCGTAGGCCGCACAGTAAGAATCACCCAGTGGTCAATTTTAAAGAAGACCTAAAACCCACATTTGTATGAAAAGCTTTCTAGTTTGGCAACGTCAGACGGTGAAAAATGGTTCCTGGATTTTGGCCTGAAGTGGCCTGAAGTTAACCACGTTAATCCATAAACCTCCTTTGTATTTTGTCACTTTGGCAATGAAAATGATgacatttcattatatttaccttctaattagtttaatttttttttactgctgccCCGATGAGATtagaattgttttgtgtttctcaggATTATGCTGTTAGGTTGATGCTCCAgtcctttaataaaatgttgaatgtttgcCTCTTTATCTGACACATCACAAACCCTTTCAATTATGTATAAGGTCTGAAGGGATTTACAATTTACATGGTCTGATCCTTTACTATTACATTATTCAGGAAGACGCACCTTAATGTGCATTTCAGTCTAGAAGGAGGAGCTCTGTCTGaatttatataataatctaCTATCTTCCATTAGAGCTGTTTATACCATCAGTtgttataaaattgtatattgaTGATTACATATCCctttatgtattgtttacttTGGTAAAAAGCTAAGAACGTATTGttcaaaaacatattcaaattcCCTATACCCTTTGATTCAATCCTACGTTTTAAGAATAAAACCATTCTTTTTTTACTATATagaaattatttttgtgaagtcACTAATTCAGTATGAGATTTTCATCTTCCCTGTGCAAATCATGCACTTTTCCACTGTGGTTTAGGAGCCAGCTAAATTAAGCTTGAAATGTTTATGACAGTTCTCCAGCTGGacagaagcaaataaaacatttattttagctaGTAGCAGCAATATGATACCAAACGCATCAACTCAGCCTCGAATAATCAATGTGGTATCTCCTTTAAGTATGAGTAAGCCACTTATTGACACCACTGTAATTTTAGAGATGtttccaaagaaacaaaacgATTAGCCTTTCCTTTTATCTGGTGTACTTCAGATAAGTGCTAAAATAGTTTTCCAATTAGAGGAACTGAAGAAGTTCTGTAAAGCGATTGACCATGAAGTGGTTTAACACAAACTTCAACAAAATGTCTCCCTCAATGGCAGCTTTATGTTCACCATAGATATTTCTTGTGTGTACCCAGCTGAAAACTACCATCATTTATAactggcatttttgttttttattcaatgtGGCACTAACTTCTTGTTAAGTTATGTATATTGtcattaatgtaaaaaaatgtttatttgtgcttAATTGAGAGGATTTAATTTATATCTAGCATTATCTTTTTCGTTTTTTGCCtacattgtttgatttgttgttgttgtttgttttctttgtgtcctataatatgttataatatgaattttgcattataa

Function

GO: NA

KEGG:

id description
K04617 GPR156, GABABL; gamma-aminobutyric acid type B receptor-like

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90338 lncRNA upstream 218316 28526788 ~ 28578733 (+) True G72273
TU90255 lncRNA upstream 455332 28337291 ~ 28341717 (+) True G72208
TU90212 lncRNA upstream 496236 28297669 ~ 28300813 (+) True G72173
TU90207 lncRNA upstream 499565 28240566 ~ 28297484 (+) True G72169
TU90084 lncRNA upstream 1317605 27475064 ~ 27479444 (+) True G72072
TU90416 lncRNA downstream 81067 28918976 ~ 28921290 (+) True G72341
TU90428 lncRNA downstream 143213 28981122 ~ 28985576 (+) True G72353
TU90429 lncRNA downstream 151698 28989607 ~ 28991299 (+) True G72354
TU90496 lncRNA downstream 299220 29137129 ~ 29137353 (+) True G72409
TU90507 lncRNA downstream 319116 29157025 ~ 29160425 (+) True G72415
AMCG00014725 mRNA upstream 17759 28767435 ~ 28779290 (+) True AMCG00014725
AMCG00014726 mRNA upstream 30959 28695811 ~ 28766090 (+) True AMCG00014726
AMCG00014723 mRNA upstream 187862 28591078 ~ 28609187 (+) True AMCG00014723
AMCG00014724 mRNA upstream 206089 28583469 ~ 28590960 (+) True AMCG00014724
AMCG00014720 mRNA upstream 313199 28456195 ~ 28483850 (+) True AMCG00014720
AMCG00014727 mRNA downstream 44008 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014728 mRNA downstream 67992 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014734 mRNA downstream 258220 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014733 mRNA downstream 283042 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014739 mRNA downstream 409966 29247875 ~ 29256354 (+) False AMCG00014739
TU90214 other upstream 492976 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 917249 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 955178 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 5941403 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10522689 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 1013541 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1926442 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 2140307 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 2141661 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 2152154 30990063 ~ 30996363 (+) True G72787

Expression Profile