RNA id: AMCG00014735


Basic Information

Item Value
RNA id AMCG00014735
length 2615
RNA type mRNA
GC content 0.42
exon number 6
gene id AMCG00014735
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29351748 ~ 29383448 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACGCCAAGTACTCCGCCATCTTCGACTCCAGCAGCAACCACAGCCGACTTGCGTTCTACGTCATCAACGAAAGAGTCCCGCGCAAGTGCGTTGTTCGAAAGGAGGCCGAGAAGGTTGAATTCGTCATCGTTTTTGGAGAGAAGGAACATCTACCGTCGACACAAGAGGTCGTTATTACAGCAGTTGTGACCGCTATATTCCCAACGAACAGACAGAAACCAAAGGAGCTCAAGTGCTACTCAGTGTAATCAAACAGAAGCAATGAGAGCCCCAGCAATAAAAGCACTACCACAGgtgTTTCTTTAAATGACAAAGTTGAAATACAATGGATAATCTATTTTTACATATGTGCTGCAGTCGTGACTTTCATCGTAATTGTGGTGATCATATCATTTTACTGCTTGCATGCAAACAAAGCATCCCCAGGGCAGAAGGATGCAGTTCAACAAAAGAAGCAGCTAAGGACAACAGTGTCCAGCACTGCTCCTGGAGGCCTCTCAATGTGTGCAGCACCAAAATCGCCTTGCATCAGCACAAGGCCACCGAGTGTCCCTGAGCGGACAAGAAGCATTCGATCTCAACCAGCAGGCCGTCACAGCGAGCCTAGCACAGTGTACGACAACGACAACCTCCGAAGGAAATCCCGGAGGAAACAGACTGCTTCCAATGGGGCTCCAAAAGCTGGCCGGAATGAGCCCAACCAGGTGTCCATTGTGATACAGACCTCTGATATCTACGACAACGTGGAGCAGGAGACGGAGGGGGATTCTTTCACCCTCGTGTACGCCGCCTTGAACCACAACAGCGAGGACTGCCCAGTGCGGACTTCGGCCCCCATGGATGACTACACAGAGTATGCTGCCATACGCGTCTGTCCGTGAGGCGTCCTCTTGTCCAGAGCTGAGACATCATACCATTTCCAAGGTGCAAAATGAAGAAGAACTGGAGTCACAGATCTACTGCTAGCTGTTCTCATGAAGGCACCATTTTGTACGCTTTCCCACTATTGTACGCATCAATGGTGCTGACTGCAAGACACTTCGTGCTGGGCCATTGCAAATAACCTCTGCTATTTTTGTGGCCCATTTATTACTTGTTTCTTGAGTTGTGAATGGGCTGAGACACTTCTAGGATTCAGCATTTGTTCCTCATAAGTTGCAGAAAGCAAGACTTAAAAGCTTGTTAGTAGAGACAAACAGTTGACATGGCCTATGGAGAATTGTTGCTGGGTTACATTGATTCTGCTTCGACCTGTATTGGTTAGATATGGCCACCTGTAGGGCAGTTGGCCATTGGAGATATGTCCATCAGAAAGCCTCAGAATACAGCAGAACTAATGATCAGAAATGGGTATGGAAAGCATGTGCATAAAGCCTTAATCAAGGAAGAGCACAACACAGGACAAAAGAAACACACTGTCCCAAATGATGTCTCCAGTTAGTGCCTTTACAATCatgtcacatttttatataatgaaaactgttatttttattactgtagTCTCTTGAATTTAAATGGTCCTGGTCAGGCGTCATTGTTTATAAACTTGTTACTGCTTAGAAACCTGATAAACCTGTCAGTACTAACTAATAAGTATATTTTGCTTTCTTAGAATTGCACATTACAAGCCAGATGGCAGGAAATGAGCAGGTGAGGTTGGTGATGTGTTGTGTGACTCTTTTAGCTCCTGACACTTTTAAACATCTGTGACTGCAGGAGAAAGGGATCTATGAATGTGGGCctatgaaaaaacacacaatttcctTTTGGCTCTTGTTCTATAGAAACTGAGgttcttttattttatgatttaaaagtcaaagtcagcagtgcaattttattttatttatttgtttttttccaatgtaaAGCTTTGTGGAATGCGGCTTAAGACGTTCCTGAGCAGTGGTCTGAGGAAACAAtatcacaaaagaaaagaaaaaaacaatgcagttaACTATGATTTTCATTGTCAGACCTTGCACACTTTGTTCTTGAAAGAGGAGGCTTAGGGAGGAAggtggttatttttttttcttgtctcaCATAAACAGATGTAGAAGAAAAAGTGAACCCGTAGGCCTACAGCAAACAcatattcacaaaataaaaggcatCTGTTGTATTGTCTCATTTGAGgtgaaccaaaataaaattTCAGTCACTTCAAAGAGACAGGGTGTCGGCCGTTAATTTAACCACTGACCAGAGGTGACACCAGAGAAGATGCATTCGTGTTTGTTGCTAAGCAGTATCTTGCATAACACcttaacattaacaacacaatcTTTTCACAATAAGGCAGaacatgtttcctttttttaagcaactgaaaacaaacagtcCACAGTCCTGTTTTGTAGAGTGTTTACAttattgttgtagttttttcGACATTgcttgaatgtttattttatgcctGTGTTATACAGGCTTTTGCTATAATCCTACTAAACCTGGCTAAGGTTCTATTTTATCAAAAGTTCTATCGTAAGCGAGATAGAAAGGTAAATTGCTGTTGTCAGGGCAACAagcattataataaaaacataatgattGTGGATTAGTTTCATGGTAtgttatagtatatatatatatatatatatatata

Function

GO: NA

KEGG:

id description
ko04660 T cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90574 lncRNA downstream 94 29350078 ~ 29351654 (-) True G72472
TU90530 lncRNA downstream 133715 29217780 ~ 29218033 (-) True G72438
TU90515 lncRNA downstream 162704 29188690 ~ 29189044 (-) True G72423
TU90506 lncRNA downstream 204580 29146843 ~ 29147168 (-) True G72414
TU90446 lncRNA downstream 357398 28925630 ~ 28994350 (-) True G72370
TU90580 lncRNA upstream 12038 29395486 ~ 29398305 (-) False G72477
TU90604 lncRNA upstream 37812 29421260 ~ 29423372 (-) True G72495
TU90655 lncRNA upstream 177090 29560538 ~ 29562066 (-) True G72535
TU90650 lncRNA upstream 264140 29647588 ~ 29649642 (-) True G72530
TU90712 lncRNA upstream 355759 29739207 ~ 29743212 (-) True G72581
AMCG00014732 mRNA downstream 319840 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 338693 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014730 mRNA downstream 400396 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014718 mRNA downstream 856722 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014719 mRNA downstream 857262 28494106 ~ 28494486 (-) True AMCG00014719
AMCG00014742 mRNA upstream 70594 29454042 ~ 29463876 (-) True AMCG00014742
AMCG00014744 mRNA upstream 106617 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014748 mRNA upstream 232073 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014750 mRNA upstream 266990 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014749 mRNA upstream 274825 29658273 ~ 29659385 (-) True AMCG00014749
TU90285 other downstream 1019266 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17689255 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18553601 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20034581 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 20967524 8383285 ~ 8384224 (-) True G69156
TU90581 other upstream 5842 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 2879719 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3214014 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3214014 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3418410 32801858 ~ 32806295 (-) True AMCG00014824

Expression Profile