RNA id: TU90536


Basic Information

Item Value
RNA id TU90536
length 1916
lncRNA type sense_over
GC content 0.39
exon number 3
gene id AMCG00014739
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29247875 ~ 29256354 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAATTCCTGTCATCTGACTACTGTGCTGTACAGTTCGGTGTTCATTTCATCTCTCTTGTTCACAGGCATATCTGAAGTGACAGCTGTAACGCACCATGTGCCGAGCGTCGGGACTTCTTCGCAAAAGGTTGTTGTCATCTGCGCAGCCACGGGTTTGCCAGCCCCGCAGGTGAAATGGAGCAGCACAGCAGGCGCAGTGCTTACAGGACAGGAAAGGGTGCAGAGAGTGAACGGGATCTACACTGTGACCAGCAACCTCACCGTGGACACCTCCGAACTGGCAGACAAATATGTGGACTGTGTGGTCAGCAACTCCGACCTGAAAGAGCCCATTTCCCAGCGCGTCAGCCTGGAGCAAATGGCAAGAACAACACCTGAGCCCACAGAACCCTCATCGAAGGACTCATCTTTTTCTATCATGGCTGTCTCTATTGGGGTGGTCATACTGGTCACGGTTGCCATCTGTCTTCTGCTTTGGatcaaaaagaaacacagagATGCATGTACAGAATTAAGAAACAGGACTGGGACGATTGGGGAGAgctgctgttttgttgtgtgctCACATGAAACAGAAGCACAACATCAAAACAGTATTCTATGATCTGAGTGGATGCCTTTGCTATAAGCGGTCAGAGGCTATTAAccatggaagaaaaacaacaacattaaaacaaactcgCTTTGAGCAAACACTCCAAACATCTTTGCCACTGAACAAACATTGTCTGCGCTCCGGTACAATACACTTTGGGACTGGATTCCTCTTGCAGCAAGCTGTGATGTCAAGTACCTTCAGGACACAACTTCTCCAAACAGTTCGGTTGCCGCAGCGCTTTAATGgttaaaatttgtttttgtttgctttttcatgaAGCTACAGATACGTTTCataattatgaatgtgttttttagttgtttttttcggTTACAATTTACTTGTTTCtgacataaagaaaaaaaagtatcctACAAGCATTTTCTTTTGGGTCATTTCCCCCCCCATTGGAATCAACATATTGTGTTCGTTATCTTCCCATACACATGTATGTgggtttacattaaaaaagtgtcCATAAAGCTGGTTCAGGGGAATATTTGTGTCTTTAAATTCAGAATGTAGCAAAGGATTGGGGTTGGTCTGGGGCAGTATCATTGTTTAAGCTGTGAATAAGCTAGAGGTCCAAACCAGGATAAATATCTGTAGGGAACATAGCTACATTTGAATGTGTTCTGTCTATATACAAGTATAGTAGACGGAGATACTGAGCATATATCTAAACTGCACTGTGTTTACATTCTACCTCTTTTTCTATTTGAAGATTGTCTACATCTTGTACTGttgcacttttatttgtatgtgtatttgaaatatgtaattaatgtgggACACAAATGTGCTTGCTGCTTGCAATACGTGAATTCATAACATTATGAGGTATCTTTTAAACAAGTTGGAATTAGAAGAGCTGgataaaaaagaaactgtaaTTACCAATATTCTGTATGTGTGCAATACTCGATATGTGAACAAGTGAATATTAACATGAATATATACAGCTGATATAAAATTATGCATCTGCTTTTTGTAACCCTTGGTTTCGGTATTAAAACAGTTTCTTCTGTGGATTACCCTTGCTTACACTAACCTTGgcaatatatgcatttttctgTCAATTATTTATAGTAACTCTAGGCTTTTCTCTGACCTGGTATAATGATATACACCTTTATGTATTGCACTATATTGATATGTGTCCCTTATGACTATCAGTCCCAATTTCATATTTGTTGActatcttttcttctttttattttgtttttgtaatgttaacctgttcagaaatgtaaactttttcaatttgcactgttttgtattaaataatttatttttattttaaatgcactttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90518 lncRNA upstream 56968 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 88821 29157025 ~ 29160425 (+) True G72415
TU90496 lncRNA upstream 111893 29137129 ~ 29137353 (+) True G72409
TU90429 lncRNA upstream 257947 28989607 ~ 28991299 (+) True G72354
TU90428 lncRNA upstream 263670 28981122 ~ 28985576 (+) True G72353
TU90544 lncRNA downstream 15624 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA downstream 18146 29270851 ~ 29272518 (+) False AMCG00014738
TU90738 lncRNA downstream 590762 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1584131 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1588855 30841560 ~ 30844670 (+) True G72768
AMCG00014733 mRNA upstream 120204 29120951 ~ 29129042 (+) True AMCG00014733
AMCG00014734 mRNA upstream 138608 29096129 ~ 29110638 (+) True AMCG00014734
AMCG00014728 mRNA upstream 332612 28905901 ~ 28916634 (+) True AMCG00014728
AMCG00014727 mRNA upstream 358278 28881917 ~ 28890968 (+) True AMCG00014727
AMCG00014729 mRNA upstream 411337 28797049 ~ 28837909 (+) True AMCG00014729
AMCG00014738 mRNA downstream 16933 29269638 ~ 29279149 (+) True AMCG00014738
AMCG00014737 mRNA downstream 55235 29307940 ~ 29321592 (+) True AMCG00014737
AMCG00014741 mRNA downstream 130783 29383488 ~ 29398221 (+) True AMCG00014741
AMCG00014740 mRNA downstream 147927 29400632 ~ 29421379 (+) True AMCG00014740
AMCG00014736 mRNA downstream 178816 29431521 ~ 29437107 (+) True AMCG00014736
TU90214 other upstream 945173 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1369446 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1407375 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6393600 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 10974886 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 598745 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1511646 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1725511 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1726865 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1737358 30990063 ~ 30996363 (+) True G72787

Expression Profile