RNA id: AMCG00014742


Basic Information

Item Value
RNA id AMCG00014742
length 2903
RNA type mRNA
GC content 0.54
exon number 14
gene id AMCG00014742
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29454042 ~ 29463876 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCCGGCCTTGCGCCCTGTTCGAAACTCTGACGCGGGTGTGACGTCAATGAGGCAGGTATCAATTTGTTATGGCAGGGAGGCCGGGGGAGGAGTTCCCAGCTGAGTATTAGATTGTAGCTTTCCGCATGCCAGTGGAGCTCACAAACCCGGGATACCATGTAGCCAGAAGTGAAGCACAGTACCAAAAAACTAGTTGTACATAAACTCTGGCCATACTGTGTACCATTTATGAGTCTGGCCTACAAGTTGTGTACTTCTtgaaatatattgtgtattataATATCCATGAAGTGATTTGACCTGGGCTACCAACAGAAGAAAAGCAGCCCAAGTGCGGAATAAGGAGTGTGTATGTCCGTTAAGACAAAACCACCTGGAATACGGAAGACAGAGCCCGACACACGCCATGGTGATCATGCCGGAATGTACCGCGGAGTCGCTCCCCAGCCACCCGCCTGGAAGGCCCTTACAGGTCGGGTTCTACGAGATCATCAAGACCCTGGGGAAAGGCAATTTCGCCGTTGTCAAACTTGCCAGGCATAAAGTCACCAAGACACAGGTCGCCATCAAAATCATTGACAAGACCCGATTGAACTCTTCCAACCTTGAAAAGATctacagagaagttcagatcatGAAGCTGCTGAATCACCCGCACATCATAAAGCTTTATCAGGTTATGGAAACCAAAGATATGCTGTACATTGTAACGGAATATGCGAAAAATGGAGAAATGTTTGATTATCTGACATCTAACGGCCGCCTGAGTGAAGAAGAAGCCCGCAAGAAGTTCTGGCAGATTTTAATGGCTGTGGATTACTGCCACAGACATCACATTGTTCACAGAGACCTAAAGACTGAGAATCTACTGCTGGACGccaatatgaatattaaattagCAGacTTTGGCTTTGGGAACTTCTATAACGCCAGGGAGCCCCTCTCTACGTGGTGTGGGAGTCCACCTTATGCTGCTCCCGAGGTCTTTGAAGGCAAGGAGTATGAAGGACCCCAACTTGATATTTGGAGCTTGGGAGTAGTCCTGTATGTCCTGGTCTGTGGATCTCTGCCATTTGATGGAGCCAGCCTGCCTGCCCTCAGACAAAGGGTGTTGGAGGGGCGTTTTCGCATTCCTTTCTTTATGTCACAAGaCTGTGAGAACCTGGTGCGGAGGATGCTGGTAGTGGACCCTGCGAAGCGCATCACCATTGCCCAGATCAAGCAGCACCGCTGGATGCTGGCTGACCCCACAGCTCAGCAGCAGGCAGTTTCTGTGTCCCTCAGCGACTACAACTCCAACCTGGGCGACTACAGCGAGCCGGTGCTGGGCATCATGCAGAATCTGGGCATTGACAGGCAGAGAACCATCGAGTCGCTTCAAAACAGCAGCTACAACCATTTTTCGGCCATTTACTACCTGCTACTGGAGAGAGTGAAGGAGCACCGAAACAGCCAGCTGACTCGGCAGTGCGGCCCCTGGACTCATAGACCACGGAGCAGCTCGGAAATGACTCCTGCTGAGGTGCCTCAGGAGTGCTCAGACAGTTTCAGGACAGCCTTCCCCTTCCCGACGCTGAAGAGCTTGCCCTGTCATTGCGACTCTGAAAGCGACTCCACTGGCTTGTTCCAGCGGGTGGTGTTTCCGGTTGAGGCCAGTTTCAACGGACTGCTGCGCAATCGCTCCATCTCGCCCAACAGCCTCCTGGAGACCACCATCAGCGAGGAGGTGCGGCCCGGGGacctggaggaagaggaggggctTATGGTTGCCACACCCCCTCTTCCCCCCAATAACAATTCCCGGAGACACACGCTGGCTGAGGTCTCCGCCCACTTCCACCAATGCAGCCCTCCCTGTATCGTAGTTTCCTCGGTAAGCCCCTCTGACGGAGCCTCTTCTGACAGCTGCCTGAAGTCATCTTTGCTTGCTAGGCCTGCCCTGGGCGAGGGAGGCCACTCCACCCTCCTGGCATCAACCATGGGACCAGGTACCTCTGGTCAGACTGGTGCGCCCTTCACCCAGTCCTCCACCCTGCTGCTGCAAGCCCAAGGCTGCCACATCACCACCAGCATGCCGGGCGCCAATTTCCAAGAGGGTCGCAGAGCGTCCGACACCTCGCTCACTCAAGGGCTCAAGGCATTTCGGCAGCAGCTGCGGAAGAGCACGCGCTCCAAGGGCCTCCTGGGACTCAACAAGATCAAGGGCCTGGCCAGGCAGGTGTGCTCCCCGTCCCCCAGCCCGCGGTCGGCCCGCTCCACCCTCAACCCTTCCCTCTGTGTGTCTACGGGCCTCCCCGCCACTGGAGGCAGCCGAGACCGCAGGAGCCTCCTGGAGGAAGTGCTGTATCAGCAAAGAATGCTTCAAATGcaacaccagcagcagcagcaacaacagcccACCGTGTTCGCCAGCCATCAAGCAGCTGTCCCCTGCCCGGGCCTGTTCCCCACCTCTGCTGTGGTTCCCACCCCCGCCCCCGTCTACTCTTTCCTGCGGGCAGACGCACAGCTGCAGCCCCCCAGCAGCAGCCCCATGCTCCACTTCCCCCAACTGCACACGGAGTCGCGGGTGCACTCGGCCGCCCACCTGCTTGAGACCCATCTGCACATACATGGTGGCGCCTCCTACCTGCCCCACCTATCCTATCAGCTCCAAGGCTGTGAGCTCTCTCAATTGGCTGACTGCGAAATGGAGGACCTCACCAACAGAGAGCTGAGTAATTACGTGCTGGTAAAATAGACacctataaaaaaaatctggaaaaatatCGAATACGTATCTTGTTGACTAACACAGGCTTGGACTTCCGCCAGctttctgacacacacaaaccttgttttttttttttttttggttagactctttatttaacaaaaggaaaaggaaaaaaaaaaagagcaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K19008 SIK1; serine/threonine-protein kinase SIK1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90604 lncRNA downstream 30670 29421260 ~ 29423372 (-) True G72495
TU90580 lncRNA downstream 55737 29395486 ~ 29398305 (-) False G72477
TU90574 lncRNA downstream 102388 29350078 ~ 29351654 (-) True G72472
TU90530 lncRNA downstream 236009 29217780 ~ 29218033 (-) True G72438
TU90515 lncRNA downstream 264998 29188690 ~ 29189044 (-) True G72423
TU90655 lncRNA upstream 96662 29560538 ~ 29562066 (-) True G72535
TU90650 lncRNA upstream 183712 29647588 ~ 29649642 (-) True G72530
TU90712 lncRNA upstream 275331 29739207 ~ 29743212 (-) True G72581
TU90767 lncRNA upstream 482841 29946717 ~ 29947061 (-) True G72629
TU90785 lncRNA upstream 504779 29968655 ~ 29982575 (-) True G72642
AMCG00014735 mRNA downstream 70594 29351748 ~ 29383448 (-) True AMCG00014735
AMCG00014732 mRNA downstream 422134 29023778 ~ 29031908 (-) True AMCG00014732
AMCG00014731 mRNA downstream 440987 28995936 ~ 29013055 (-) True AMCG00014731
AMCG00014730 mRNA downstream 502690 28930365 ~ 28951352 (-) True AMCG00014730
AMCG00014718 mRNA downstream 959016 28494507 ~ 28495026 (-) True AMCG00014718
AMCG00014744 mRNA upstream 26189 29490065 ~ 29507061 (-) True AMCG00014744
AMCG00014748 mRNA upstream 151645 29615521 ~ 29643703 (-) True AMCG00014748
AMCG00014750 mRNA upstream 186562 29650438 ~ 29651309 (-) True AMCG00014750
AMCG00014749 mRNA upstream 194397 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014756 mRNA upstream 371375 29835251 ~ 29841157 (-) True AMCG00014756
TU90581 other downstream 55737 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1121560 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 17791549 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 18655895 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20136875 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2799291 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 3133586 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 3133586 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 3337982 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 5305707 34769583 ~ 34769979 (-) True G73328

Expression Profile