RNA id: AMCG00014746


Basic Information

Item Value
RNA id AMCG00014746
length 3814
RNA type mRNA
GC content 0.61
exon number 23
gene id AMCG00014746
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29588801 ~ 29614037 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATATTTCAGTATGAGTCGAGGTGGATGGAGGAAGAGAGCTAGTGACGATGACGGTTGGGGAAGCATgGGTGGGTATATGGCCGCCAAGGTCTGCAAACTAGAGGAGCAATTCAAACTCGATGCCCCTCGGCAGCAGCAGAAGGAAGGGACCTGCTCCAATATCTTCAGCGGCGTGGCGATTTACGTCAACGGTTACACTGACCCCACAGCGGATGAACTGCGCAGGCTGATGATGCTCCACGGAGGCCAGTTCCACATGTACTACTCCCGCTCCAAAACCACGCACATCATCGCCACCAACCTGCCCAACACCAAGATCAAGGAGCTCAAGGGGGAGAAGGTAGTACGGCCTGAGTGGATCACAGACAGCATAAAGGCTGGACACCTTCTCTCATACCTCCAGTATCAGCTGTATGCCAAGCAGAAGGGCCTAAGCTTCAGCAAGGCCTGCTTATTTGGGGAGCCCTCGGCGGGGCCCAGCCATTCTCACAAGGAGCTGGAGGGCCGGGTGAACGGGTTGAGGAATATTCCTGATCTGGTGCGCGACCTGCAGGTTAACGGGCTGGTGGGCGAGGAGTCCCATGAACTGGGCCACCCCGGGCCACCTTCCCCATCCCTGGACCGAAAACCCAGGGAGCCGCCTCCTACCCTCACCAACGGCCATGCACACCCCCCGAACGGTGCCTTAAAACCCCAGGAACTCTCTCCATGCCCGGGCAGGGCTCAGGCCCACTCGCAGGCCGCCCCTCGGCTGCCTGTTACGGACTCCGATGTGGACTTCAGAGACGGGTGCGGGGGGGCGATGCTAAGGCCACCCGGCCCGTTACCTTTGCGCAGTCCCGTCAGACTCAACGGCTCTTGCCATCCTGGCATTCAGGGCCCTTTGCACGCTAAAAGCCCTTCAGAACTTCCTTCCTCCAGGAAACCAGCGTCCCCAGGGGGGCTGCCCAAGCCCACCGAGCCCAACTTCATATCAGACTTCTACTCGCACTCCCGACTGCACCACATATCCACCTGGAAGTGTGAGTTCACAGACTTTGTCAACATGCTGCAGCGGAGGAACAGCGGCATCTTCCCTGGGAAGGAGAAACTGAGACGCCAGAGGCCAACCAGGACCTCCGACCCAGGAAACTCGAGTACAGGCAAGGGCAGCGGGTTTGGACACACCTGTCGTGCCCCCAGCCCAGCGGCCCCTCTCCGCCGTCAGAGCTGCATTTTGCACGTAGACATGGACTGCTTCTTCGTCTCGGTAGGAATCCGACATAGACCTGACCTGAAAGGGAAGCCAGTGGCGGTCACCAGTAACAGGGGAGCAGGCAGGGTCCCACAGCGGCCTGGCGCCAACCCTGAGCTGGAGATGCAGTATTACAGGCGGAGACAAATGAGGAGTAAAGGAGATGAGAAGCGAGTGTCGGAGCTGGGGGACTCCTCCTCGCCCGAGAGTCCCGACCCCTCCCACGTCAATGGAGTGGACACGGACCTGGCTGCTCTCTCCATGGCCGAAATTGCCTCCTGTAGCTATGAAGCCAGGCAGGCGGGGGTAAAGAACGGGATGTTTTTCGGCCAGGCCAAGCAGCTGTGCCCTCATCTCCAGTCTGTGCCCTACGACTTCCATTCCTACAAAGAGGTGGCACTGGCCATGTACGAGACGCTGGCAAGCTACACTCATGACATCGAGGCGGTCAGCTGCGACGAGGCGCTGATGGACGCGACGGAGCTGCTGAGCGAGCTGGGGGTGTCACCCGATGACCTGGCCAGTGCCATCCGAACCGAGATCCAAGAAAAAACCAAATGCACTGCCTCTGTGGGCATGGGTTCAAACATTCTGCTGGCCAGAATGGCAACTCGCAAGGCCAAGCCAGACGGGCAGTATTACCTCAAGCCAGAGGAAGTGGATGACTTCATCAGAGATCAGCTAGTCACCAGTCTGCCAGGGGTCGGCAGGTCGATGGGCTACAAGCTGGCCTCGCTGGGCGTAAGGACGTGTGGCGACCTGCAACAGGTGTCCATGGCCAAGCTGCAGAAGGAATTCGGGCCCAAAACCGGTCAGACGCTGTTCCGTTTCTCCAGGGGGCTGGACGACCGGCCCGTGAggagcgagagggagaggaagtCCGTGTCGGCAGAGATGAACTACGGCATCCGCTTCACACAGCCGTCGGAAGCCGAGTCGTTCCTGATGAACCTGGCAGTGGAGATCCAGCGGCGGCTGCAGTCGGCTGGGATGAGGGGCCGGCGACTCACCCTCAAGGTCATGGTGCGCAAGCCCGGTGCCCCCCTGGAGCCAGCCAAGTATGGGGGCCACGGCATCTGTGACACCCTCGCCAGGACAGTAAGCATGGACCAGGCCACAGACAATGCCAAGGTCATAGGCACAGAGGCAATCAAACTGTTCCACTCCATGAAGCTCAACGTGTCCGATATGCGAGGGGTGGGAATGCAGATGCAGCAGCTGTCCTCAGCATCCTCGACATCGCCGTGGAACTCATCGGGCCAGACTGCGCCGCGCTCGCGCTCCATCAGAGACATGCTCTTCACACATCGCCGGACCAGCCACCCCACCAGCCTGGGCCCCGCAGCCTCGCCAGATGTTCTACCTGGTGCCCCAGCGCAGGACGCAGGCCCCAGTAGGGACAGGACCTCCCCCGTCTCAATGCTCCTGCCTCCccctccatcctcctcctcGACGCCGGAGCCCGTGCCAGGGACGAGCAAGGGGGAGCCTGCCCTCCGATACAATGGGGGGCTCCATCCCCACGCCAGGACGCGACTGAACCTCAGCATCGAAGTGCCGTCCCAGATCGACCCCTCAGTGCTGGAGGCCCTCCCGCCAGACATCCGGGAGCAGGTGGAGCAGACTTGCCACAGCCGAGCCGAGGACACGTCCACCCGCACCGCCCCCGAGCCCCAGCACCTGGGCACCCTGGTCCTGCAGATCCCCGATCAGCTGACACAGGGTGGCATTATCCTAGCCCTGCCCGACCTCTCCCAGGTTGACCCGGACGTGTTTGCTGCGCTGCCCCCAGAACTGCAGGAAGAGCTGCGGTCGGCCTACGGACAGAGACAGACCCCCAACCAGCCTGTCACAGTGGCAGTGGCCAGGAACACCCTGCTGCATCTGAAGCCGCCGCCGGCCGCAAAGACCAAGAGGCGCAACAAGAAGAAGAACCTGGCCAGCCCTGTCAAGAAGGGCCAGAGCCCCCTGAAGAGCCGGCTCCTCACCAGCCCTGCCAAGAGCAGCCCCCACAAGCTGCTCCCAGACCTGCTGAAGCACGGGGGCCCGGCCACCGACGCCCTGAAGCTGGAGCCGAGGCCGTCCACGTCGGGCCTGAAGCCGGACCCCCAGGAGGAGGTGTTGAAGCCTGCCGTCCACCGAGGACCGAGCCTGGCTGGGGCCTTCGAACTGCAAGACATCAAGGGGCTGCTGAAGGAATGGGTCACCACCATCTCGGaTCCAATGGAGGAGGACATCCTGCAGGTAGTCAAGTACTGCACTGACCTCATCGAGGACAAAGACCTGGAGAAACTCGACCTCGTCATCAAGTACATGAAAAGGCTCATGCAGCAGTCGGTGGACTCTGTGTGGACGATGGCGTTCGACTTCATCCTGGACAACGTTCAAGTGAAGTGTCAATGGAGGTCTGGAAGCGATGGCTCTCATGGAGCGATCTCGCTGAACGTTCGAAACCCCAGGTCGGTGGCAGGCTGGAGCCGGGCTGAGAGCAGCACGCACAGGGCCAGCAGGATTCACGTTTCGGGAGAAGGACTAAGCATTCTGGGAGCCTGGCGCTCTCTGCTCGCTGTGCCATAA

Function

GO: NA

KEGG:

id description
K03515 REV1; DNA repair protein REV1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 316283 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 316283 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 336096 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 396523 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 428376 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 229430 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1222799 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1227523 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1232125 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1341868 30955905 ~ 30956284 (+) True G72783
AMCG00014743 mRNA upstream 30100 29540531 ~ 29558701 (+) True AMCG00014743
AMCG00014736 mRNA upstream 151694 29431521 ~ 29437107 (+) True AMCG00014736
AMCG00014740 mRNA upstream 167422 29400632 ~ 29421379 (+) True AMCG00014740
AMCG00014741 mRNA upstream 190580 29383488 ~ 29398221 (+) True AMCG00014741
AMCG00014737 mRNA upstream 267209 29307940 ~ 29321592 (+) True AMCG00014737
AMCG00014745 mRNA downstream 29739 29643776 ~ 29649810 (+) True AMCG00014745
AMCG00014747 mRNA downstream 39156 29653193 ~ 29657089 (+) True AMCG00014747
AMCG00014753 mRNA downstream 45507 29659544 ~ 29684659 (+) True AMCG00014753
AMCG00014752 mRNA downstream 94368 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014751 mRNA downstream 121854 29735891 ~ 29739643 (+) True AMCG00014751
TU90214 other upstream 1284728 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1709001 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1746930 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6733155 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11314441 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 237413 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1150314 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1364179 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1365533 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1376026 30990063 ~ 30996363 (+) True G72787

Expression Profile