RNA id: AMCG00014751


Basic Information

Item Value
RNA id AMCG00014751
length 1965
RNA type mRNA
GC content 0.48
exon number 4
gene id AMCG00014751
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29735891 ~ 29739643 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttttttttttttttttaagataggAATGTTAGAGCCCAAATATGTGACTTATGTAGTGGCCCTTGGCAGCCACAATTCAGATGCCACTTGGGAAGGTTTATAACTTTATAAGCCACGCTGACAGGAACTTAGAtgtcaaattatacaaatggcAGTAGTAGTAATTGCTGAAAGTGTACACATctgattatatttaatgtaacagAGAACTCCCTTATGCAAAACCAATTCCTTTGCatgcacattattaaaataggctaaatgaagttttttttttaaataattcaacaaaTCATACAAATATGACTTGTTGTAATACAAACTCCCTGCTATCCAGTTACACAACAGACCTCTAAAGCTCCTTAACGTCCCGTCAACCCCGACAGAAGTTGGAGCAGATTAAATGTTAGTAAACAGCAGGAGGACGAGCTGTGTTTGAGTTGCAAACCGTTGCTGTTCGCCCGGGAGGTGGTGCCATCTTCCAGCTGTCGGCATTAGCGACAGCGCTCCGTGCATAAGCGCTGTCTGGAGCTTCAGGCGCTGTATCATGGGCTACGAAAAGCCGCGCACGATGACAGAACCGCAGCGTGTTTTCTTCGCGAGGCTTAACCTGGTTTTGGCCGTGCTGGTCACGCTGCTGTGCGTGGGGGAGAGCTATGTCATCCTGAACTCCGTGTCCTGGGCTGTGACCAGCGAGGTGGAGGAGGAAATCGACGCTTCTTCAAACGAGGACGCGGCCCCGGCTCTCCTGGAAGACACCGGCAGTATCTGGAAGCAGTCCTACCCGGCCGCCGTGTACAAGGAGGATGCGGAGCGGCGAGGTGCGCCGAGGACAGCGAGCGCCAAGCAGCTGTCCTCCCCGTCCAGGATGTTCTCCTACCGCAGAGAGGGGCTGAAGGCGACGGACTCCGCAGCGCCTCCGCCGCATGAGGAGGCGGAGAGGACAGCCCGTTACCTGGCGCATCACAGCAGCTGGGGCTTTCTGGCTACCATTTCCACACAGCAGAAGATTCAAGGTTTGCCATTCGGAAATATTTTCTCTGTGAGCGACGGCCCCCTGGACAACGGCACAGGGACACCGTACTTTTACGTCACTGCCATGGATAACAGCGTGGTGGACCTTAGGAGCAACCCGGCAGCCTCGCTCACCCTCTCCGAGGCAGAGAATTGTATTGCATATGTTTATGTTGAGTCCTTTGGCTATTGCCTGGGTTCTTCTTGCAGGGACAACTTGATTGATCCTCAAGACCCCAGGTGTGCCAGGTTGACTCTGACTGGCAGGATGGTGGCAGTGGAAGTCAAGGAGGTTGACTTTGCAAAGGAAGCTCTGTTCTCCAGGTCAGGGGCCAGGCACCCTCAGATGAAGAAGTGGCCCATTGGACACCATTTTTTCTTCATGAAGCTCCAAATCGAGCAGGTGTGGCTCCAGAACTGGTTTGGAGGGATTTTCCTAATACCCCTGGAGGAGTACTTCCAAGCAAGCCCCTAATTCCATATCTCTCTCCTCATATGTGGTTTATGGAGATCTTGGTTCTTTCAACACCTGTGTGGAGTAGGCATGGTTTAGATATAGCAGTTCACTGGCACCTTGTATTCTTGATCCagaattacttttatttaacagAGAAAGAGGGATTGATTAGTGGTGGTTCTCTTAGGCCACCTAGATAACCCCAACCTGTTATTAAGAGCTATGACTGTTATGAGCTCTGACACACAAtgcttttctctgtctctgctggGAATAACATTTAGCATTCATATGTCAGGATTACCAGAAATAGGTCTGTTTTGCCACAAAGACTTTTGAGAAAAGGAGAGCTTTTATTCTATACATTTGGGTGACCAGATATGCCACCTGTGtaaagaaatatttatttcagttgcgAGTTTCTAATTCTTGTATACATTCAGTAGTATTTACCTTATTGTGACACCATACTACATTTCAgttgtctaaaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 463373 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 463373 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 483186 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 543613 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 575466 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 103824 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1097193 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1101917 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1106519 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1216262 30955905 ~ 30956284 (+) True G72783
AMCG00014752 mRNA upstream 2269 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014753 mRNA upstream 51232 29659544 ~ 29684659 (+) True AMCG00014753
AMCG00014747 mRNA upstream 78802 29653193 ~ 29657089 (+) True AMCG00014747
AMCG00014745 mRNA upstream 86081 29643776 ~ 29649810 (+) True AMCG00014745
AMCG00014746 mRNA upstream 121854 29588801 ~ 29614037 (+) True AMCG00014746
AMCG00014754 mRNA downstream 48083 29787726 ~ 29829991 (+) True AMCG00014754
AMCG00014757 mRNA downstream 103947 29843590 ~ 29844077 (+) False AMCG00014757
AMCG00014761 mRNA downstream 353769 30093412 ~ 30094212 (+) True AMCG00014761
AMCG00014760 mRNA downstream 360343 30099986 ~ 30142954 (+) True AMCG00014760
AMCG00014778 mRNA downstream 422335 30161978 ~ 30172006 (+) True AMCG00014778
TU90214 other upstream 1431818 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1856091 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1894020 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6880245 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11461531 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 111807 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1024708 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1238573 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1239927 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1250420 30990063 ~ 30996363 (+) True G72787

Expression Profile