RNA id: AMCG00014753


Basic Information

Item Value
RNA id AMCG00014753
length 2334
RNA type mRNA
GC content 0.58
exon number 19
gene id AMCG00014753
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29659544 ~ 29684659 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCCCGTCTACAGCGGCCCCTACTGGCAGTGTATTATCGAAAGCCCGGAGTCTGTTGGTGCTCTGGAGCGCTGCCTGCAGGAGCTGCAGGGGGAGAAACAGAATTTGAGCAGCCAGGTGGAAGATCTGACCAAGGGGAATGAGCAGCTTTGCCAGGAGCTCAGCCACATCGACAGGCTAGCccagcagctggaggaggagaaggagaaagccCTGGAAACTGCAGACAAGGAGGTGGAAGAGGCCAAGAGTGTCATTGAGAGCCAGCAGAGAGAAATCAGCTCACTGAAAGACACCATCCACAAGCTTAAAACAgAGGCAGAATCTTTCCAGGGTGACTTGGggcagcttcaagcacagcttagaGACAAAGCTGAGGTGAACCAGGACCAGGACAGGTTACTGGATCAACTGCAGGTGGATAGGGATAGGCTTGCCAGGCAGGTGGAAAAGCTTGGCATCTTGGAAAAAGAACAGTTGATGCATACAGGGTCCTGTCTCAAAGGGAAGCTCAGTAAGAGGGGAAACAGATCATCTCGCCTGGACTCCTTCGTGAGGAGTGTGGAGGAAGACCGGGActtttacaaacgagaggcgGACACCTTACGGAGAATGCTGCAGAACAGGCACTCCAGCCCCATGCGGAGTGCCTCTCGGGGCCGCAGCCCCACCAAGCAATCCCCAGTGAAGGGAGGGAGCTATGACTCGGAGTTAATGCGGACCCGGCGGGAGAGGGACGAGCTGCAGGCCATGATGGACAAATATGAGCGCCACATGTCTGAAATCAAGGGCAACATCAAAGTCCTGACTGCAGACAGAGACAAGGCCGACTCTCTGTACCAGCAGGCCCAGGAGGAGATCGCCAGGCTGCGGCGAGAGATGATCCGGTCTCCCCGTGCCCCCAAAAGCAACGTGACGGCCCAGAGCATCCTGCGGCGCGTCGAGGCCGAGAGGGACGAGGTGGCCGCAGACCTGCGACGCATgagcactgagagagacagtCTGTGGGAGAGGCTCAAGATATCGAAGGAAGCAGCCATATCTCAGAGGGCTCACCTGGAGCAGAGAGTGGAGGACCTGGAGTCCACTGTTTTCAAACTGGAGAAGGAGCGTGATTCCCAGGACACCAGGCAAGCCATGATAAAGGACGCCATGCAGTctgtggaggaggaggtgagagAGATGAGCCACAAAGCAGCCATCACTGAAGAGGAGCTGGCCAGGACCAAGGCAGAGTGCAGCAGGCTGAgAGAGATCAACACACTCAGTGAGGAGGTGTACACTCTGCAGACCACTGTGGAGGAGCTGGACAAGGAAAAGGACGGGCTGCAGGGTGAACTGGACGACAAGGCAGAGACCATCTCATCTCTGAGGGACCAGCTGGAGGAAAAGGCGACGGGGCGGGAGCGGGAACTGGGACGCATGCGCCGTGAGCTGGACTCGGTGAACCAGGAGCTGGAGGCTCTGCAGTTAAGACTAGAAGATTCTGGACGGAAAGTGGAGGACCTCAAGTTGAAAATCCAAGACTATGTCAACAACGTTACAAGAACAGAGAATCTGCTTGCCTCCAAGGAGAAGGAGGTCCGAGAGCTGCAGGAGAGCCAGCGTCGAGCTTTTGCCCAGGCAGACGGCTGGGAAGACAAGGCCCGGCAGGCGGAGAAGGAGGCCAGCTCCCTTCGTCTGGACATGCTGAGCGGGGAGTCGGAGAGACGCAGGCTGAAGGACAAGATCGACCAGGTCACTCAGCTGAACCAGAGCTTGCTGCACCTAGAGGAGGAGCTAAGACAGGCCCAGACTGAGAAGGCCTCAGTCCTGACTGACCTGGAGTCCACTAGGGAGCTCTGTATCAAACTGGATGCCAGCAAGGAGGCAGTGCAGCGTGAGCTGAACTCATCCTGCCAGGACAACGAACTCCTCCGGAAAAAGCTGGCCAGCGAGAGGATCACTATGAAGAACATGGAGTTACTGCTGGTGTCCAACCAGGTCAGCAGCGACAGCAAAACAATGAGTCAGGGCCGGGAAGTGGCGCAGCTTGAGGCCGACCTGGAGATGACCAAACGGCAGCTCTCCACCGAGCGCTCTGAAAGAATTAGCCATAGCCGGGAAGTGGCGCAGCTTGAGGCCGACCTGGAGATGACCAAACGGCAGCTCTCCACCGAGCGCTCTGAAAGAGAGCGTGCAGTGCAGGAGCTGCGCCACCAGGGCCTGACCTCCACGCTTCGCGCCTCCTCTCCCATCCGACGCTTTCGGGCCTCCTGGTCCCCAGAGCGCTCCTACCTCACTAGCCCAGATAGGGCAGTGGACAGgGGTGTCCGAAGCAGAGAATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 387026 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 387026 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 406839 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 467266 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 499119 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 158808 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1152177 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1156901 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1161503 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1271246 30955905 ~ 30956284 (+) True G72783
AMCG00014747 mRNA upstream 2455 29653193 ~ 29657089 (+) True AMCG00014747
AMCG00014745 mRNA upstream 9734 29643776 ~ 29649810 (+) True AMCG00014745
AMCG00014746 mRNA upstream 45507 29588801 ~ 29614037 (+) True AMCG00014746
AMCG00014743 mRNA upstream 100843 29540531 ~ 29558701 (+) True AMCG00014743
AMCG00014736 mRNA upstream 222437 29431521 ~ 29437107 (+) True AMCG00014736
AMCG00014752 mRNA downstream 23746 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014751 mRNA downstream 51232 29735891 ~ 29739643 (+) True AMCG00014751
AMCG00014754 mRNA downstream 103067 29787726 ~ 29829991 (+) True AMCG00014754
AMCG00014757 mRNA downstream 158931 29843590 ~ 29844077 (+) False AMCG00014757
AMCG00014761 mRNA downstream 408753 30093412 ~ 30094212 (+) True AMCG00014761
TU90214 other upstream 1355471 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1779744 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1817673 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6803898 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11385184 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 166791 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 1079692 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1293557 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1294911 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1305404 30990063 ~ 30996363 (+) True G72787

Expression Profile