RNA id: AMCG00014754


Basic Information

Item Value
RNA id AMCG00014754
length 1647
RNA type mRNA
GC content 0.52
exon number 16
gene id AMCG00014754
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 29787726 ~ 29829991 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCTGGTCGCCTACCAGCGAGAGTTCCATGCCTTAAAAGAGCGCCTCCGTGTGGCGGAGCAGCGCACCCTGCAGCGCTCGTCAGAGCTTAACACCATCCTGGAGCAGTTCCGCCGTGCCATCACCGAGACCAACGGCAGCAAGGATGCCCTCAGCAACTTCTCAGATGAGACGCAGAAGCTGCTGAAGGAGCTGACCCATAGGAAACCTCTTCAAGTGCCAAATATCTACTACCACCTGCCTCACCTGCTCAACAATGAAGAGAGCCTGCAGCCAGCTGTCCGGGTGGGCCTGGGGAGGACCGGAGTGTCTATTGTCATGGGCATCCCGACGGTGAAGAGGAAAGTCAAGTCCTATCTGGCGGAGACGCTGCACTCCCTAATCGACAAGCTGTCAGACGAGGAGAAGCTGGACTGCGTGATCATAGTCTTTATTGGAGAGaCAGATCTGGATTATGTCCATACCATGGTGGATAGCTTGGAAAAAGAGTTCTCCACAGAAATCAACTCGGGCCTGCTGGAAGTGATTTCTCCTCCTGCCAGCTACTACCCTGACCTCTCCAGCCTGAAGGAGACTTTCGGTGACTCGAAGGAACGGGTCAAGTGGCGGACAAAGCAGAATTTGGACTACTCATTCCTGATGATGTATGCTTTGAATAAAGGGGTTTATTATGTCCAGCTTGAAGACGACATTGTTGCCAAACCAAACTATTTCGCCACCATGAAAAACTTTGCTCTCCAGCTCTCCTCTGAAGACTGGATGATTCTGGAATTCTCCCAGTTGGGTTTCATCGGAAAGATGTTCCAGGCTCCGGACCTGAACCTAATTGTGgagttcatcttcatgttctaCAAGGAGAAACCTATTGACTGGCTGCTGGATCATATCCTGTGGGTGAAGGTGTGCAATCCTGAGAAGGATGCGAAACACTGCGAGAGGCAGAAGTCCAGCCTGCGAGTGCGGTTCAGGCCCTCTCTCTTTCAACATGTGGGCCTGCATTCCTCTCTGGCCGGAAAGATCCAGAAACTTACTGACAAGGACTTCCTCAAGCCATTGCTCCACAAAATTCACGTGAACCCTCCAGCGGAGGTCTCCACCTCTCTAAAAGTTTACCAAGGCCACACTCTGGAGAAAACCTATATGGGCGAGGACTTCTTCTGGGCTGTTACCCCCACGGCAGGAGACTACATCCTGTTCAAGTTCGACAGGCCTGTCAATATAGAGAGCAGTCCTGGGGTACAGTGCAACAGTAATGGGGAAATGCTGAGGATCTGTGAACGGATTGAGAAGAGAACACAGGGAAACCATGCGGCCTGCAGACAGGgcgatttgtttttaaatgtaaaggtgCAGTTAAATCTGTGGAACAGGTACCTATTCCGCAGTGGAAACCCAGAGCATCCGGGAGACAAGATCCAGAACACCACAGTGGAGATACTACCGTTCTCGGAAGCTGGACTGGAAACCAAAGAGAAGTCCAAACGGACTGAAGATCGCTTTTACAGAATAGgGCGCTTTGAGAACGGGGTGGCGGAGGCGGCAGTTGACCCCAGCTTTAACCCGGTGGCGGCTCTGCGCCTGACTGTGCAGCAGGACTCAGCCGTGTGGGCCATCCTCAGCGAGATCCACATTAAAAGAGTGTCCAGC

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K00738 MGAT4A_B; alpha-1,3-mannosylglycoprotein beta-1,4-N-acetylglucosaminyltransferase A/B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90544 lncRNA upstream 515208 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 515208 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 535021 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 595448 29191971 ~ 29192278 (+) True G72426
TU90507 lncRNA upstream 627301 29157025 ~ 29160425 (+) True G72415
TU90738 lncRNA downstream 13476 29843467 ~ 29846586 (+) True AMCG00014757
TU90938 lncRNA downstream 1006845 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 1011569 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 1016171 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 1125914 30955905 ~ 30956284 (+) True G72783
AMCG00014751 mRNA upstream 48083 29735891 ~ 29739643 (+) True AMCG00014751
AMCG00014752 mRNA upstream 54104 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014753 mRNA upstream 103067 29659544 ~ 29684659 (+) True AMCG00014753
AMCG00014747 mRNA upstream 130637 29653193 ~ 29657089 (+) True AMCG00014747
AMCG00014745 mRNA upstream 137916 29643776 ~ 29649810 (+) True AMCG00014745
AMCG00014757 mRNA downstream 13599 29843590 ~ 29844077 (+) False AMCG00014757
AMCG00014761 mRNA downstream 263421 30093412 ~ 30094212 (+) True AMCG00014761
AMCG00014760 mRNA downstream 269995 30099986 ~ 30142954 (+) True AMCG00014760
AMCG00014778 mRNA downstream 331987 30161978 ~ 30172006 (+) True AMCG00014778
AMCG00014773 mRNA downstream 345076 30175067 ~ 30182397 (+) True AMCG00014773
TU90214 other upstream 1483653 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 1907926 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 1945855 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 6932080 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 11513366 18271854 ~ 18274360 (+) True G71004
TU90740 other downstream 21459 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 934360 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 1148225 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 1149579 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 1160072 30990063 ~ 30996363 (+) True G72787

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073881 True 1614 mRNA 0.50 13 NC_007120.7 7096995 ~ 7212973 (-)