RNA id: AMCG00014761


Basic Information

Item Value
RNA id AMCG00014761
length 801
RNA type mRNA
GC content 0.62
exon number 1
gene id AMCG00014761
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30093412 ~ 30094212 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGATTCCGATGCCAGTCTAGTGTCCAGCAGGCCATCGTCTCCCGAAGTGGATGACATTTTCCTGTCCAGCGTAAGAAAGACCGCCGGCTTTTCGGGCACCGTATCGTCCACCCAGAGCGACTCTCCTCCGGGCTTAAGCGCCGACGCCCTGTCCGCCGCCAGCCCCAGCGACGACGACTGCCCGCTGAAAATGCTGTCCAAGAAGGACCGCAAACTGCTCTCGGAGTCGGAGCTGCAGCAGATGCGGCTGAAGATCAACAGCCGGGAGAGGAAGCGGATGCACGACCTGAACATCGCCATGGACGGCTTGCGGGAGGTGATGCCCTACGCGCACGGTCCCTCGGTCAGGAAGCTCTCCAAGATCGCCACGCTGCTCCTGGCCCGCAACTACATCCTGATGCTGAGCAACTCGCTGGAGGAGATGAAGCGGCTCGTCAGTGAGATCTACGGGGGTCACCACGGCGGCTTTCACCCTTCGGCTTGCGGGACGATGGCGCATACGGGACCTTTGCCGGGCCATCCGGGTTCTCACTCCTCGCACCCGGTTCACCACCCGATCATACCGCCCGCCGTGTCGAGCGCATCGCTGTCTGGACCAGGTATCTCGGCGGTGACTTCAGTCAGACCCCACCACGGACTCCTGAAATCTCCTCCCGCCGGCGCAGGTCCCCTCGGCGGCAGCTTTCAGCACTGGGGCGCGGGGATGCCCTGCCCGTGTAGTATGTGCCAAGTGCCCCCTCCGCACGTTTCCAGCATGACTTCTGTGAGCATGCCAAGGCTAACTACTGACTCGAAATGA

Function

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0001764 neuron migration biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0050769 positive regulation of neurogenesis biological_process
GO:0007400 neuroblast fate determination biological_process
GO:0007403 glial cell fate determination biological_process
GO:0021742 abducens nucleus development biological_process
GO:0021754 facial nucleus development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09085 BHLHB1_6_7; class B basic helix-loop-helix protein 1/6/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90738 lncRNA upstream 246826 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 820894 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 820894 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 840707 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 901134 29191971 ~ 29192278 (+) True G72426
TU90938 lncRNA downstream 742624 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 747348 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 751950 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 861693 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 909160 31003372 ~ 31003788 (+) True G72789
AMCG00014757 mRNA upstream 249335 29843590 ~ 29844077 (+) False AMCG00014757
AMCG00014754 mRNA upstream 263421 29787726 ~ 29829991 (+) True AMCG00014754
AMCG00014751 mRNA upstream 353769 29735891 ~ 29739643 (+) True AMCG00014751
AMCG00014752 mRNA upstream 359790 29708405 ~ 29733622 (+) True AMCG00014752
AMCG00014753 mRNA upstream 408753 29659544 ~ 29684659 (+) True AMCG00014753
AMCG00014760 mRNA downstream 5774 30099986 ~ 30142954 (+) True AMCG00014760
AMCG00014778 mRNA downstream 67766 30161978 ~ 30172006 (+) True AMCG00014778
AMCG00014773 mRNA downstream 80855 30175067 ~ 30182397 (+) True AMCG00014773
AMCG00014776 mRNA downstream 103551 30197763 ~ 30211831 (+) True AMCG00014776
AMCG00014767 mRNA downstream 147494 30241706 ~ 30250266 (+) True AMCG00014767
TU90740 other upstream 241591 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 1789339 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 2213612 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 2251541 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 7237766 22855342 ~ 22855646 (+) True G71525
TU90928 other downstream 670139 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 884004 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 885358 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 895851 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 1622906 31717118 ~ 31754930 (+) True G72925

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00074497 True 1684 mRNA 0.48 2 NC_007120.7 32751428 ~ 32753535 (-)
grasscarp (Ctenopharyngodon idella) CI01000009_02300395_02301213.mRNA True 1529 mRNA 0.46 1 CI01000009 2300109 ~ 2301637 (-)
rainbow trout (Oncorhynchus mykiss) TU2077141 True 1910 TUCP 0.49 2 NC_048586.1 45838750 ~ 45840982 (-)