RNA id: AMCG00014762


Basic Information

Item Value
RNA id AMCG00014762
length 2365
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00014762
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30212138 ~ 30217061 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGTAACTAAAAATGGCCTCTCTTGACAGAGTGAAGGTGTTAGTTTTGGGAGATTCGGGTGTTGGCAAATCATCACTGGTTCACTTGTTGTGCCACAATCAAGCACTGGGTAACCCTTCTTGGACAGTGGGGTGTTCAGTGGATGTGCGGGTCCATGACTATAAAGAGGGAACTCCAGATGAGAAGACATACTACACTGAGTTGTGGGATGTAGGAGGATCAATAGGCAGTGCAAGCAGTGTAAAAAGCACCAGGGCTGTGTTTTACAACTTTGTCAATGgCATCATTCTAGTCCACGATTTGACAAACAAGAAGTCCTCACAGAATTTGTGTCGCTGGTCGATAGAAGCCTTGAATAAAGATCTGTCTCCAACAGGGGTTATAGTCACAAACGGtGACTATGACCGGGAGCAGTTTGCAGAAAATCAGGTTCCACTGCTGGTGATTGGGACCAAGTTTGACCAGATCCCAGAGAACAAGCGCAATGAGGTGTTAACAAGGACTGCTTTCCTTGCAGAGGATTTTAACGCAGAAGAAATAAATCTGGATTGTACTAATCCCAGGTATTTAGCTGCAGGTTCATCAAATGCTGTCAAGTTGAGCAGGTTTTTTGATAAGTCCACACCATTGCTGAGTCTTCTCCACAGCTGTCATCCAACACGAAGTAGAGTAAAGTGTCATCAAGGGAGAACCCAGATTCACCAGTAGAGACGCTAGCATTGATCCTTACCTGATTTCAGAGCATTGATACCCAACCCTGGTTTTGGTGAGATCTATAGGgtcttttggttttcattccaaccaaTACCACAACATGAATGATCCAATTATTGGCTTAAAGAGTCAAGATAAACATGATATTTAGCCACTGACTGAAGACACACAGACTCTGACAGATTGGTGCTCCCCTGGACCACAGTTGGAGATCACAGTGTAGCCAGATGCATTGACTGTCAAAATTATACAAATCCCTGCACCACAGCCCTGAGAAACCATTAGTTTGTGTATTCAAACACTACATTTCACAGTTATTGGGGGAATCTAGGGTTGCACTTTGCAGTCATTAGAGTCAGTAATGAACCGTTGTTACGCCCACTTTTCCACAGGTTAAACCTGAAGTGAACATGATTAACTCATTAAATGGCACAATAAGAAAGTTTGCcctgtgaaatgttttgaacTTTACCAAATAGCCTAcataatgtgtacatttgtgttcaGCATGAAGGATATGATTCAACTCTTCTATTTTTGTAGGTAATTGAAAAAAGATACTTCACAAGGGATGGAAATCAGCTGGGTGGTTTCTCAGACAGGAAGCGAAACTTCAAAACCCTTCACTATGACTGACTGTCACCCTTTACTGCCCCCACAAGGCTTGGAACTATAGAGACAATGAAGTTGTTTTGTGGTTGTGGAATCCAGCTGTTTCATCTGTACCATTGTGACAGTTTAATGGAAttttccattgtgtgtgtgtgtaaattgaGTGTAATAAGTAATGAGTCATGCCATCAGGGGTGGCAGGGAAGGTGGGTGAATGTCTTTACTTTTGATACTGTGGAATTAAGACTTAAAGGACCAgaaattgattttcattttgttttttaaggtgcTGTGTGATAAGAAATTAGCATATATTTGTAAGAGATAAAGGGTTACCTGTCTTCTTTCATATATTTGCTTTCCAGTTTGTGGAGTGGTACCTGAATTAACTTCTCTGGCAAACTAACAATACTAAACACCTCATATCTACTTTGACAAAAGCTGTCAATAAGTTATTATCAATGTGTTGGTAAAGCACAGGGACAAAAATGGGGAGTACAGGCCTTAACAAGCTCCTCGGGTTTGTCATCTTAATCAGTTGTTTGAAGTGATCTTGCAAATGTCAGTCAGttatttgttgttgcttttctgaTGCTCAAAGGATTGTTCTCCAAAACATGTCTCATTTGTAAAGATGAAAGGAAGTACATTTATAGATGATATATGTCTGCAAataattacaacattttttaaaccaaatgtaTAGCCAACCACATAACTTGCAGATATGTGCAACGTTTTGTTTCTGTACCTTTGTATCcaaaatgtgaataatttttaaacaataaatgttCTCTCAAAACATTTCATAGCTGGCCTGAGTAATAATCCCTCAGACCCTTATAATGGTTAAATGtggtgctttgttttctttcttttttccagcgcttttgtggttttactatgcattttcatttgtgtggCTAGGTGCTGTTGTCTTAATTGTGAGAGGCTTAACACAGCCATTCAAGGTATGGTAGTTAGATACTGTTCTCCAAAACTCCACTGTATAAGACTAGCTCTGTCTGTGACATCCAGG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07933 RABL3; Rab-like protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90829 lncRNA downstream 742 30211142 ~ 30211396 (-) True G72680
TU90803 lncRNA downstream 45212 30166717 ~ 30166926 (-) True G72659
TU90789 lncRNA downstream 156965 30054340 ~ 30055173 (-) True G72646
TU90785 lncRNA downstream 229563 29968655 ~ 29982575 (-) True G72642
TU90767 lncRNA downstream 265077 29946717 ~ 29947061 (-) True G72629
TU90837 lncRNA upstream 44276 30261337 ~ 30261604 (-) True G72685
TU90845 lncRNA upstream 178078 30395139 ~ 30395338 (-) True G72693
TU90943 lncRNA upstream 624462 30841523 ~ 30844128 (-) False AMCG00014775
TU90944 lncRNA upstream 624462 30841523 ~ 30844948 (-) True AMCG00014775
TU90970 lncRNA upstream 729029 30946090 ~ 30947343 (-) True G72790
AMCG00014758 mRNA downstream 260833 29950031 ~ 29951305 (-) True AMCG00014758
AMCG00014759 mRNA downstream 271255 29915255 ~ 29940883 (-) True AMCG00014759
AMCG00014755 mRNA downstream 359180 29843424 ~ 29852958 (-) True AMCG00014755
AMCG00014756 mRNA downstream 370981 29835251 ~ 29841157 (-) True AMCG00014756
AMCG00014749 mRNA downstream 552753 29658273 ~ 29659385 (-) True AMCG00014749
AMCG00014763 mRNA upstream 403444 30620505 ~ 30627347 (-) True AMCG00014763
AMCG00014764 mRNA upstream 413375 30630436 ~ 30646339 (-) True AMCG00014764
AMCG00014765 mRNA upstream 451465 30668526 ~ 30689037 (-) True AMCG00014765
AMCG00014766 mRNA upstream 471981 30689042 ~ 30695325 (-) True AMCG00014766
AMCG00014780 mRNA upstream 542096 30759157 ~ 30763061 (-) True AMCG00014780
TU90581 other downstream 813833 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 1879656 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 18549645 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 19413991 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 20894971 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 2046106 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 2380401 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 2380401 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 2584797 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 4552522 34769583 ~ 34769979 (-) True G73328

Expression Profile