RNA id: AMCG00014772


Basic Information

Item Value
RNA id AMCG00014772
length 1275
RNA type mRNA
GC content 0.54
exon number 7
gene id AMCG00014772
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30594129 ~ 30610104 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATGTCAATGGACATTGCACTAGTCCCACCTCACAGCCCTGCAACACTGGGAAGCGCATCTCCAGCACTGAAGGCACTAAGCTCAATCGCCGAGGTCCTGGCCGGCCTCCTTTCAGAAAAGCCCAGTCTGCTGCTTGCATGGAGATCTCTTTGCCTGTCTCCCACACAGAAGGTTACGCTTCCAGACGGGCAATGCTTCAGCAATTACACGGAGTCAGTATTTACTCACATGACGAGCACCACGCTGCAACTTACTCATGGAGTGAAAAAGAAAGCCGGGAAAATTCGTTCAGCCGCTCCCGCAGCTCCAGCGTGTCCAGCATTGACAAGGAGACCAAGGAGGCCATCACTGCGCTGTACTTCATGGAATCATATGCCCGTAAAAATGACACCACCCTCTCGCCGTCTCTTTGGGTCGGCACAAGTTTAGGGGTGGTGTTGGCCATCTCTTTGAACCTGCCTGTCGGTGAGGAACAGCGACAAACTGAGCCCATCGTGGCATCACCGAGTGGCACAGTGCTGATGTTAAAAGGATCTGTGCTGACGTTTGCTTCCCTGGACTGCTCGGGGGGGCTAATTCACCAGCCTTACGAGGTGTGGAGAGACGCTCACAGTTTGGACGAGCACGAGAAACCCCGCAAGAGGAAGCTCGTCAACTTCTCTCCCTCCACTTCTCAGGATACAGTGGATTACCAGTTTGCAGTAATCTGCTCGGAAAAACAGGCCAAAGTCTTCTCACTGCCATCTCAAACCTGCCTTTACGTACACAACATCACAGAAGCGTCTTTTGTCCTCCGGGCTGACGTTGTTACACTTTGTAACAGCGTCTGCTTGGCTTGCTTCTGTGCCAACGGACATATCATGACTCTCAGCTTACCTAGTCTAAGGCCGATGCTGGATGTGAACTACCTGCCTTTGACAGACATGAGGATCGCACGGACTTTCTGCTACACCAATGGGGGGCAGGCCCTGTATCTGAGCTCCCCTACAGAGATACAGCGCATCACATACAGCCAAGAGATGTGTGACAACCTACAGAATCTGACTAAACCTACTGTTGGGGAGGCTGCTGCAGGGAAGGCTTCCCGGAGTCTGGCTCAGCACATCCCAGGCCCAGGGGGTATGGAGGGCATGAAGGCCGCTGCGGGTGGGGTGGTGGGAGACTTGGCACGGGCCCGCATTGCGCTGGAGGAGAGAGGACAGAAACTAGGCGACCTGGAGGATCGTACTGCAGCCATGATGGCCAACGCAGAGTCCTTCTCCAAGCACGCACAC

Function

GO: NA

KEGG:

id description
ko04024 cAMP signaling pathway
ko04080 Neuroactive ligand-receptor interaction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90738 lncRNA upstream 747543 29843467 ~ 29846586 (+) True AMCG00014757
TU90544 lncRNA upstream 1321611 29268329 ~ 29272518 (+) False AMCG00014738
TU90543 lncRNA upstream 1321611 29270851 ~ 29272518 (+) False AMCG00014738
TU90536 lncRNA upstream 1341424 29249246 ~ 29252705 (+) True AMCG00014739
TU90518 lncRNA upstream 1401851 29191971 ~ 29192278 (+) True G72426
TU90938 lncRNA downstream 226732 30836836 ~ 30837169 (+) True G72767
TU90940 lncRNA downstream 231456 30841560 ~ 30844670 (+) True G72768
TU90941 lncRNA downstream 236058 30846162 ~ 30846421 (+) True G72769
TU90963 lncRNA downstream 345801 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 393268 31003372 ~ 31003788 (+) True G72789
AMCG00014770 mRNA upstream 45607 30545213 ~ 30548522 (+) True AMCG00014770
AMCG00014769 mRNA upstream 62630 30525993 ~ 30531499 (+) True AMCG00014769
AMCG00014767 mRNA upstream 343863 30241706 ~ 30250266 (+) True AMCG00014767
AMCG00014776 mRNA upstream 382298 30197763 ~ 30211831 (+) True AMCG00014776
AMCG00014773 mRNA upstream 411732 30175067 ~ 30182397 (+) True AMCG00014773
AMCG00014779 mRNA downstream 49497 30659601 ~ 30660595 (+) True AMCG00014779
AMCG00014774 mRNA downstream 90102 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014768 mRNA downstream 118259 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014777 mRNA downstream 195519 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014771 mRNA downstream 237068 30847172 ~ 30851142 (+) True AMCG00014771
TU90740 other upstream 742308 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2290056 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 2714329 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 2752258 27835503 ~ 27841871 (+) True AMCG00014704
TU89430 other upstream 7738483 22855342 ~ 22855646 (+) True G71525
TU90928 other downstream 154247 30764351 ~ 30805741 (+) False AMCG00014777
TU90965 other downstream 368112 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 369466 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 379959 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 1107014 31717118 ~ 31754930 (+) True G72925

Expression Profile