RNA id: AMCG00014781


Basic Information

Item Value
RNA id AMCG00014781
length 7422
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00014781
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30907169 ~ 30917566 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATTTTGTCAGCCTCCTGAGACAAACCAAGTCTGTCTTTCCTCTCAGGGCTGTGCTGCTACCCCTGCTGGACTTGCCTGCACCTTCCCAGACCCTGTTTCTGCTAGTGGACTCTTTGGACTCAGGGTTCCTTGAAGGTGCTTTGGAAAGCCAAGCTCAGGGGAACAGCAGCTCCATCTCGGCACTCCTCTCCAGTCACCAGCAACTCCTCCCAGGCTGGCTGCTGCTCGTCTGCTCCACACGCCGCCAGAACAAGGCAGTGTGCAAGATGTTCTCAGGCTTCCGGAAACTATGTCTGGATGACCTCCGCAAAGCTCACACAGTGCGTGACGTGCAGCAGTATATCCTGTGGCGGCTGGACATGGAAGGGGCGCTGCGCAGACACCTGACACGGGAGACAGCCGACATGCTCAATCAACTGCACATCAAGAGCAACGGCTGCTTCCTATTCTTGGAGCGCGTCCTGGATGGAGTGGCTGAGAACTTTGTAGCCATCCGAGAGATCCGCGATATCCCTGGCACCTTGAATGGCCTTTACCTGTGGCTGTGTCAGAGGCTGTTCCCCAGAAAGCTCTTCTCCAGGGTGCAGTCTTTGCTAAATGCCCTGCTGGCTTCTCCGTGCCCCTTGGCACTAGAGGAGCTTTATACTGCAGTGTGGACACGAGATACGACTCTTACCCCTTTGGACTTCCAGCGCAAACTGGACACCCTGTCTATGCTCTTGGTGGATGGGCCGGGTGGCACAAAGCTCCTGTTTCATGCCAGCTTTGCCGAGTGGCTGACGGATGTGAAGTACTGCACACAGAAATACCTGTGTAACCTGGCAGAGGGCCACACCATGCTCGCCATGTCTCTGACCCTTCGGAGTTCAGAGCTCTCCCCAGAGGAAGTCTGTCAGCTTGCCTTTCACCTGGTCAGCTCTAACTTGCATTCAGACAACCCTACCCTTTTGGCTCTGTGGATGGTGTGGAATGGTGTGCCTTCTTTCACAAGTAATTTCCTAGCTACTGACCCATTCCCCCCATCAGCAGTTCAACAGGAGGTGCTGCAGCTACTGATGAAGACTGGGGTTTACCCGCCATCTTCCTCCGATTGCGTCCATGGCTTGGGCATGGGCTGCATCGCAAGCGGAGGAGTTATTCGTAAGGCACTAGAGAGGGAAGACTCCGTTCGGGTCCTTTTGGAAAATGGGGCAAGTGTGAACCAAACGGATCCCACTGATGGGCGTACTTTGCTAGCCAGTGCAGCCCACGCAGGTTCCGCTGATGTTGCTGTTCTCCTCTTATCTAGAGGAGCTGATCCTGAGCTTGCTGACAACCAGGGACAAACACCATTAACTCTGGCCGCTCGACAAGGACATGCCAAGGTATTGCAGTGCTTGCTGGAGTGGGCCCGGCAAAAGGAAGACACCTTGCAGATTATCGATCATTCAGACAATGAAGGCTGGACCGCCCTACGCTCGGCAGGATGGGGAGGCCATTCTGAAGTAGTCCAGCTTCTTTTGGATGCAGGTGCAGATGTGGACGGCTGCGACTCTGAGGGTCGTACAGCACTGCGGGCTGCTGCCTGGGGTGGCCATGAGGAGATACTCTGCACTCTACTGCACCACGGGGCACAGGTGGACCTCCCAGACCGAGATGGACGCACACCACTAATTGCCGCAGCTTACATGGGCCACCGGGAGGCAGTGGAGATGCTGCTGGATCATGGTGCCGAGGTGGACCTACAGGATTCTGATGGCCGCACAGCCTTGTCAGTTGCTGCTCTGTGTGTCCCCTCGGCGGCGGGGCGAGGCTATGGAGATGTAGTTAGCCTGCTTTTGGAGCGAGGAGCCGATCCAGGTCACAAGGACCATGATGGGATGACTCCCCTTCTGCTGGCTGCGTATGAAGGACATGAGGAAGTGGTGGAGTTGCTCTTGGAGGCTGGTGCAGATGTGGAAGAAGGTGCAGGGCCTCATGTTGGTCCTGCTGCAGTGACACCACTGCTAGCAGCTGCCTCTATGGGTCACATCTTGGTAGTGAACATGGTGCTTTTCTGGGGGGCTGCTGTGGATGCCATTGATGGTGAAGGACGCACAGCCCTGAGCTTGGCAGCGGCCCGGGGAAGTGTGGAAGTTGTGCGGACGCTGCTGGACCGTGGGCTTGATGAGAACCACAGAGATGACCTGGGCTGGACGCCTTTGCATGCAGCTGCCTGTGAAGGGCACCGGGGAGTATGCATGGCCTTAACAGAGCGTGGCAGTATGGCCCGGGTGACAGAGCTGGACAATGATGGGCGGACACCACTTATTCTAGCTGCCCAGGAGGGGCATTTGGACACTGTGAGGCTGCTCCTTGACCGGCGGTCCCCCTTAGACCATAGGGCTTATGATGGTCATTCTGCACTGAGTGCGGCAGCTCTTGAAGGCCACAGGGATGTAGTGGAGCTGCTGCTGAGACGAGGAGCAGATAAGGATGTTAGGGATGCAGAAGGCAGGGCTTTGCTTTACCTCTTGGTGCTCGAGGGCCGTCTAGACATGGCTTCGCTGCTCCTTGAAAAAGGGGGAGTTCCACTGGAATCGTGTGATGCTGAGGGTAGGACAGCACTACACGTGGCTTCTTGGCAAGGACAGCTGGAAGCTATCAGCCTGCTTCTACGGCATGGTGCTGACAGCAATGCCCAGGACAAAGAGGGCCGCCCACCTTTACACTCTGCTGCGTGGCGGGGCCATGCCAGTGCAGCAGGCCTCCTCATTGATTCTGGAGCTGCCAATGTCGACCAAGCCTGTTGTCAACAAGGAGCCACAGCCCTTTGCATCGCTGCACAGGAGGGCCACACGGACTTGGTGGAAGTATTGTTGGAAAAAGGTGCCAACCCCAACCATGCTGATCGTTATGGGCGTACTCCTGTGAAGGTAGCTGGAAAGCGAGGTCACACCAAGATCGTACGGCTTTTGGAGAGATACGGGGCACTGCCCTATGGGGGTTTCTTACCATCCTCGCCTTGTCCGCAGCAATCCAAAACCTCCACCATGAAGACGCAGTCGTCTGGTGTCACGTCAGCCAGCTCAAGCAGTACTGGGGAGACCTCCAGGGAACAGGTTCTGCCTCCCTTTCAAACCCATCACGCAGCCAGCTCGTCATCATGCTCCCCTGGATCCACCACAGAGAGGTACAAGTCTCTGGTTGCTTCAGAAAACTCTGTCCAGAGCTCAAAGACCTCATCCTCCACTTATCACTCCATGGCCACAACACAGACTGTACCAGTGGACAGCCTGAGCTTCACCCAGCAGATCCAGCAGCACTCGCTTCCACGCAGTCGAAGTCGGCCCTCCACCATGGTGTCTCCAAACTCCACTCTGCGCAGCAATGGCAACATGCACAAAGTCAGCCAACTTCCACCAGAGCCCTCTGGTGACGCCTCTTCTCCAGAAAAGCCCGGGGTGGTGTCCAGTTCCGTGATGGCAGCTGGGGACCGTCCAAAGCCCAAACAACCCTCCCTAATCCATAGGGCCGGGGGTTCTCCGATGAGTCTCCAGCCATCTAGTGGAGGAAGGTGGAACTCAGTCATGGCCTCTCTGGGGGTGACACCTGGACAAGAAAGTCCCATTCGTCCACCAAAAACAAGGGAAAGCCCACCTCTTGGGTACCCCGTCTCAGGGAGTCCAACAGGGGGCCCAGGGCCACAGGACAAGGATGGACCTCACAAGCCTACCACGTCACCTCTCTTCTGTCCTGCAGGGAACCTTCCCAGTGCCTTACCGGCAGAGTCTATGTTTGCCCTCACCTCCATGGACCCACAGTTGAACCTAAAGCAAGCCATTAAGCTGCAGTTCGAGGGACCAACCAGTGCTGTTCTTTACAAGAGGGAAACCCCTTTGTAAGGTCGGTGTGGGAATGTGGAACTCCCAGTGGAACAGCTGTACGGGGTGCAATTGTTAAGCTGGTGTGAAGCAGTGGAGAGGAACTAACCACTAACTCTGTGAGCCTTCTTGGGTTGGTCGAGCAATCCGAAAGACTTCAAACGCCTCATGTTTACATTccagccttttttttcttttttgtgaagCAACCCTTTGTAGAATACTTGCAGAGCTTTGCTGCAGATGCAACAGTCTATCTTTATATCGCAATTACTTTATTAACTGGCAAACCCTCCACCCAAGAGTGTCCGATTGTCGCCTTCCTATGAAGTATGGGACTTTATTTCCAGGGTGGAGACGGAGAGAGGTGCATACGTTACacaaatctgttttctttatGAGAAATATGATGTGATCAGACAAGTTAGACTTCAATGTAGAGAGAGATATGTACATGGGATGGTATGGAATGGTGTTTAATACACAGCCTGACAGCCAGGGAACTGTTACAGAATTTAATGGCAGCCCTCATATTTCGGAAATGCATAAAGAGAGGCATCCTACCAGAAACTCATTACCTTGAAATTGCATTGCCAGATGATAATGTAGCAGAATGGGGGTGTTCTTAAACCTCAATGAAAttgaataatttttaaattgaattcagttcaatttccaatggaaaaaaaaaacccatttAGTCTGCCTTGAAATTGATCTGCTCTTGTCTTTCTCGGAAATAAAATggcaggtaaaaaaaaacatgggggagagaaaaaagcagGACAATTATTTAAGTAGCATCCATTTGTAATATTCTTCCAAGTCTTGGATTATGTATTGTGGTGATTAAATTACAGCTGGAGCCAAGCAGCATGGGGGTTTCAATGTACAGTAGCTCACATGATGTTTGAACATAAAAGACGAATCCAGACAAGTTAAACAATGGGGACTTTTGTGCATACAAAATCAGCTTCTGAATGGAGACCCTTGTGCCTGTGTTTGGGGAGGCTGAGCGCATCCCAGAGAGTGCACTGCCTTCGGGGAGCAAAAAGCATATAGCATCTGGGTATTAGATGGAGCTTGAGGAGAGGTGTGTCACTGGAGTAAGTACTTATCAGCCTTAGACCAGGCGAACACAGATTCTGCATAACAGAGAAACTAGCCCTACAGCTGATTTAACCCTTGTGTTGGAGGCTGCTGACAGCAGAGTCTCTTAGAAAGACaagcagatgtatttatttatttttccccattcaGAGATGAGTATTCAGCAGCTCGTGTTATCAGAAAGGGCTGATCGGAGCCAAAGTGTAAATCTTATATTGAAGACAGTATACTGAGAAGCAAGGGCAATTGCAGAGGTGCATCTCTGTTTAGGTCTGTGTGACTAGTCAGGCAGTCTAACTCCAATCTTTTTTCAGCCAGTATTTTAAGGATTGTAAGGGAATTGTAGCGCTGTCTAAGACATCAGTTTGCTGGcacaaatattgtaatgtaacaATATGGCCTTATTGTAACgttcaaaagtaaaaatgtcATTTAGGGGCAGAATGAATTGGTCTTTGTGAGGGGCAGTACAAAGTGTGAGGGTGATGCTGGGAAAGttacatgcattttacattaacTTGACTATACAAGTGTCGGGTAGGGGAAAAGAATGAGCAGCAAtgcataatgtttttaatttttatataacattttaacttGAGCACTGTGCTTAGGTATTATATAAGCAACTGTATAGGATCTTGTCTTGTATCTTTGCCATTGCTAAAGAGATCTATGTGCCACAAGGTATAGCTTCACTTTTATGAGCCACTCAAATATCTGAGGACCTCCCCTGAGGGAGTCTTTTAGCCTTAATTTTACATACACCTCCCTTCAGTTAACAGTTATATGGGACCTGACCCTCTATGCTGGTCTATCTATATAAAGCAAAACTCTTATTTAtgaaaacctctctctctctctctctcaaatgtaatacatttaaaagggtggagttaaaatatgaaatacaggtGAACATAGccgttttattttcttgaaggtttttccattcattctttaaaaaattacCTGTGCCCCCCTTGACTGCTGTACAGCACAATCCTGAAGatcagcattaaaataaattggggGTGAGTAGCTGCAATTAATACTGTTCTTCCTCCCAGGtggcaaaatacagaaaactgcAGCTGACGAAGCAAAAACAGACAAGCATATTATGTTTTCCTTAAAGCAACAACCAGTTTCCTACTTGTAGGAATGCGGTGGATCGGTGTAGCAATGATTAGGATGATGATTACtcagtggaaaaaaatgcaatatgtacAAGTTTACACAATGTTTACAGACTGGGTTTTCTTTCGATGTACTTAATACTGAGACCCTAGGGGTTAGTTGTAAACATTGAACACAAAAATCAGGATAATGATGTGATAAACAGGAATTTCCCTCACACAAGAAACAACTAATATTTGTACAGACCTGCATTCCTCAGTTGAAAATGATAAATCTCTTGATAGATTTATCCCGTTTGTTGCTCGTGCTTGCTGTTTGTGGGGTGTGTGCACACTTCTGTGTGTCCCAGGAGAAGGTGCTTCTGACTTTATGCATATTTcttgtgtttaaacatgttGATACTGGTTCCATATATCCCAGTAcaacacagaaatgtttttctttgttggtggtgtttttttgttttatgatgatTGTATGACGATTTAATGATCTCTTATTGGTGGTGATTTGTGCGGATGAAGCTCTCTTTCGTTATAATATGTCCAAAACTACTGTGGGCCgagcttttgtttattttgtcttttaaaaaaaacctgtctgCCTATACAGTTTTTATCAATGTAAGGCACTTTACAAAATTGTTGTCCCCTAACTCGTCAACAATATGTATTCAATATGATTTAGgggttttcttctctttttacaagttcttatttattttaagggggGAAGAATATCATCTGAACTAACCCATCTGACTTTGTCATTGACATCTGTCAATTATTTAACagatctttttttgttttggaaaaccTCCAGGTAACATGACTAACAAAGCAGAGGTACCACAGATTGGGAAACATTTAGGTCCTGCCATACACATTGTGACACACTCAGTGTTCATGTAACACTTATAAATCAGTAGAAATACATGAtactattgttttgttttcactgtcgATGACAATCAAAAGTATTTCTGAACAGATTCTAGTTGAGAATATGGTGTGTTATCTTAACACATGGTGAGCCACAGAAATGTAGGATTACATCATAGCTGGTTTAACAGCACCAAAGTTGCACAATTAACAGGATCTGTTTTGTGCCAATGGAGACCTCGCATCTGCTCCAGCCAAGCTGTCTTGTTCAAAAGCCATAGGAAAAAATATAGTATTCTGGTATCTTTGAggcctgaaaaaataaatgcctgtgTGCATTGATGGCATATGGAtcacaaaaatgaacaaaaaatgtaaactattgtaaaaatattgcaatttctttcctttttttaaataataataaacaaactttattgtaaaatac

Function

GO: NA

KEGG:

id description
K21440 ANKRD50; ankyrin repeat domain-containing protein 50

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90941 lncRNA upstream 60748 30846162 ~ 30846421 (+) True G72769
TU90940 lncRNA upstream 62499 30841560 ~ 30844670 (+) True G72768
TU90938 lncRNA upstream 70000 30836836 ~ 30837169 (+) True G72767
TU90738 lncRNA upstream 1060583 29843467 ~ 29846586 (+) True AMCG00014757
TU90543 lncRNA upstream 1634651 29270851 ~ 29272518 (+) False AMCG00014738
TU90963 lncRNA downstream 38339 30955905 ~ 30956284 (+) True G72783
TU90969 lncRNA downstream 85806 31003372 ~ 31003788 (+) True G72789
TU90976 lncRNA downstream 225857 31143423 ~ 31147877 (+) True AMCG00014786
TU90997 lncRNA downstream 360521 31278087 ~ 31282858 (+) False G72815
TU90999 lncRNA downstream 360521 31278087 ~ 31287434 (+) True G72815
AMCG00014771 mRNA upstream 56027 30847172 ~ 30851142 (+) True AMCG00014771
AMCG00014777 mRNA upstream 94882 30805623 ~ 30812287 (+) True AMCG00014777
AMCG00014768 mRNA upstream 166025 30728363 ~ 30741144 (+) True AMCG00014768
AMCG00014774 mRNA upstream 196749 30700206 ~ 30710420 (+) True AMCG00014774
AMCG00014779 mRNA upstream 246574 30659601 ~ 30660595 (+) True AMCG00014779
AMCG00014784 mRNA downstream 105977 31023543 ~ 31027002 (+) True AMCG00014784
AMCG00014783 mRNA downstream 124325 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014786 mRNA downstream 228203 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014787 mRNA downstream 323735 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014788 mRNA downstream 380184 31297750 ~ 31308262 (+) True AMCG00014788
TU90928 other upstream 101428 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1055348 29851450 ~ 29851821 (+) True G72605
TU90214 other upstream 2603096 28302373 ~ 28304073 (+) True G72175
TU90175 other upstream 3027369 27868703 ~ 27879800 (+) True AMCG00014703
TU90165 other upstream 3065298 27835503 ~ 27841871 (+) True AMCG00014704
TU90965 other downstream 60650 30978216 ~ 30978825 (+) True G72785
TU90966 other downstream 62004 30979570 ~ 30980252 (+) True G72786
TU90967 other downstream 72497 30990063 ~ 30996363 (+) True G72787
TU91144 other downstream 799552 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1624944 32542510 ~ 32561489 (+) True G73103

Expression Profile