RNA id: AMCG00014785


Basic Information

Item Value
RNA id AMCG00014785
length 3324
RNA type mRNA
GC content 0.61
exon number 11
gene id AMCG00014785
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 30952471 ~ 30979877 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTGGCTCAGCCGGCTGAACCCACGAGCCCCCGGGAATCGGGCCAGTCGCAATGCTGCGCCCTCAAATCCGGTCATGGCTGACCCGGAGACATGCCTGATGGTCTTTCAGAACCACTGGAGACAGATGTCGTGGATCCTGGAGCAGCGCGAGAGCTCCATCACTGGTGCAGCAGACGAGCTGAGCGCCGTGCGGAACCACACCGATCAGATGCTGTGCCTGCTGGCGGAGGAGCGGCCAGGGGACCAGATGGCTATGGGACCCATTCTGGAGCTGGTGGTGTCCGAGAATATCCTGGAGCGGCTGGTGCAGTGGCACCTGCGCCGTGGCCTGGACCCCGACAGCCAGGGGGCGCTGCTCAAGCTCTTTGAGATGCTGATCGGCCAGTCCCAGCAGCCCTTGCTTCAGCACAAGCCCGTGCTGCAGCCCCTCCTCTCCTTGCTGAGCACGTGCGCCGATCCCCAGCTGGGCTCTCCTGCGGTGGAGGGGAgcctggtgctgctgctgaACCAGGTGTGCGTCTCCATGGCCAGGGAGCCCTCCATCTTGGAGCTGCTGTTCCGTGCTGCCTCCCAGCAAGGCCCCACCAATCTGCTCATCTTCTCCCTGCTGGTGCCCTTCATCCACCGTGATGGAGCCATTGGCCAGCAGGCTCGTGACGCCCTCCTCCTTGTCATGGCGACCTCCGCCGACAGCCAGGCCGTGGCACAGTACATCGCCGAGAACTCCTACTTCTGTCCGGTACTTGCTACTGGTCTGAGCGCACTCTATTCCTCCCTGCCCCGCAAGATTGAGGTGCGAGGGGATGACTGGCATGCTTTGAGGAGAGAAGACTGGATTGGCGTCGCTTCTCTCGTCCTGTTCATGAACTCACTGGAGTTCTGCAATGCTGTCATACAGGTCTCCCACCCTCTAGTTAAGAGCCAGCTTGTAGATTACGTCCACAATGGCTTCTTGGTGCCAGTGATGGGGCCTGCGCTACACAAGTCCTCTGTGGAAGAGATGATTGCCAGCACGGCCTACCTGGACCTCTTCCTGCGCAGCATCTCAGAGACGGCCCTGCTCAAGACCTTCCTGCGCTTCATCCTGCTGCATCGGCACGACAACGACACCATCCTGGACACCCTGCTCACCAGGATCAACACCAACTCAcggCTCTGCATGGTCTCACTGAGTCTGTTCCGGACTCTGCTCTCCCTCAACTGTGAAGACCTCATGCTGCAGCTCGTTCTCAGGTACCTGCTCCCCTGCACACACGTCATGCTGAGCCAGCGTAGGGCCGTCAGGGAGACTGACCTCTACGGCAAATCAGCTGACAAGTTCCTGACACTCATCCCCGAGTGTTGCCTCAGCGACACAGGGCTTTCCGTTGACCGGGACGAAGACTTGGCTTTCTGGCCCAAAGGGCCTGGGAGCCCCAGTGCGGAGTCTCCCATCTCCAAGCCCAGTACCCCATCCCGCATCGCCATGTTTATCCGGCAGCAGAGCAGCGGAGTGTCCTCCAGCTCCGAGCCACCTCAGTCTCCTCGCCACACAGCCACCAGTGGGACGCTCTCTCCGGACAGCCCCATGCACCAGGCTGCTGAGAGCCCCGATTCAGAAATGGGATACCTGGAGTACCTCCGAGACGCCCGCCGGAACATCGAACTGTGTGCCTGGGCATGTCGGGACTGGTCGGCCCCCTACGATGGGGAAGACCCCTCCCCCAGTTCCGTagtcccccctccccatccAGCTGGGGGCTTGACTGTCTTCTCTGAGCACTTCTCTAGTCAAGGGGCCCCCGTTCGGTCCCGGCCAGACTGGGAAACCCCCGAGTTGAACCCCAGCCAGCAGAAGTGCCCCAAACCAGACTTTGAGAACATAGAGCGTGACAGTGGGGAGTGGGACATCACCATCAACAAGAACTGCATTAGTGTAACGCCCCGCACCAAGAAACGCAGCCTGCAGCGCGAGTTTCCTGACCCGTTGCACTCTTCCCACCATCCTGGACTGCCTCTCCTCACggcccacccccacctcccgGCCGGAACGGAGGGGCAGCTTTCCCTCTTCAATGGGATGGGGCAGGCGGGGTCGGAGTCGGGGCCGGGGTCCCGGTACAGGCAGGATGGGGGGATGGAGGTAAAAAAGGTGCGGAGGGACCCTGAGGGGGAGAACTGTGGGGAGCAGAACGGGGGCCAGAGCATTGCCTGCAAACCAGAGCCCAGTCGGCTGTTCCACAGTTTAGGGGAGCAGGGTCATGGGGAGGGGCAGGGTCTCACTCAGTTGTCTCAAGCTCATGGGCAGACAGCTTCCCAGACTAGTGAGGGCCAAGACTCCGGCCCCGGGCAGCCGACAGTGACTCCTCGGAACCTGGAGTCAGTGGAGAGCCTCATCGAGGAACTGCTGGACCGGGATCCCAGCGACGCCAATGGGACAGGGATTAGCATCGAAGCATTCAACCAGGAGCTGAGGGAACTAGAGGAGACAGTGTGCGAGAGGAGGGCCTACAGAGGAGCTGAGCCACCTAGCAGCGCCAAAGATGGCATCCCTCCAGCCCCCACCCAcaggaaggaggaagagaggcCACCCTCCCCAGACTGTGACCTCACCAACCCCAAACCGGAAAGCACTGGGCCCTTGCTGTGCAGTCCAGCTCGTCCCTTGGGGCAGCCACTCAGCCAACCCTACACAGGTCCCTTCATTGCGGTGATCTTTGCCAAGCTGGAAAACATGCTGCAGAACTCTCTGTACGTCAACATCCTTCTCACTGGGATTGTAGCCCAGTTAGCCTGCTATCCCCAACCCCTGCTCCGCTCCTTCCTGCTAAACACCAACATGGTCTTTCAACCCAGTGTCAAGTCGCTTATCCAGGTTCTGGGCTCAGTCAAGAATAGGATTGAAGCTTTTGCTGCAACTCAGGAGGACTTCCCAGGGATGCTCCGCAAAGCCAGAAAGTACCTGGTGGCCCGAGGGAAGCTGGACTGGGCTGACTCGCCCATCGTTGTGCCAAACCTCCGCCGCACTGAAACACTAGTTAAAAGCCGCAAGCCCTCTCTTGGAGACCTGATCTTGCGCCACACCAACAGCCCGACCCGCGCCCGCCAGGCTGCCCAGATGGCCTTTGCCCATGTGCGGGATGGCGGCCAGGTCCTGCACAGTGCCCTGTTCAGGAGCTCGGGGGCAGGCACCATCGAGCGGCAGAACGAGGCGCTGCGGGTGAAGAACGCCGTCTACTGCGCTGTCGTTTTCACCGAATTCCTCAAGGAGCTGGCCGCCTTGGCACAAGAGCACGCAGTGTCCTTGCCCTTCCCCCGGAGCCAAGACACAGAGGAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90971 lncRNA downstream 1096 30950110 ~ 30951375 (-) True G72791
TU90970 lncRNA downstream 5128 30946090 ~ 30947343 (-) True G72790
TU90944 lncRNA downstream 107523 30841523 ~ 30844948 (-) True AMCG00014775
TU90943 lncRNA downstream 108343 30841523 ~ 30844128 (-) False AMCG00014775
TU90845 lncRNA downstream 557133 30395139 ~ 30395338 (-) True G72693
TU91053 lncRNA upstream 482302 31462179 ~ 31463783 (-) True G72862
TU91063 lncRNA upstream 486615 31466492 ~ 31467056 (-) True G72868
TU91062 lncRNA upstream 500971 31480848 ~ 31485466 (-) True G72867
TU91073 lncRNA upstream 535553 31515430 ~ 31519849 (-) True G72874
TU91074 lncRNA upstream 535553 31515430 ~ 31519932 (-) False G72874
AMCG00014782 mRNA downstream 27264 30922355 ~ 30925207 (-) True AMCG00014782
AMCG00014775 mRNA downstream 105671 30842042 ~ 30846800 (-) False AMCG00014775
AMCG00014780 mRNA downstream 189410 30759157 ~ 30763061 (-) True AMCG00014780
AMCG00014766 mRNA downstream 257146 30689042 ~ 30695325 (-) True AMCG00014766
AMCG00014765 mRNA downstream 263434 30668526 ~ 30689037 (-) True AMCG00014765
AMCG00014791 mRNA upstream 281839 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014790 mRNA upstream 299437 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014789 mRNA upstream 357236 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014796 mRNA upstream 489682 31469559 ~ 31471622 (-) True AMCG00014796
AMCG00014794 mRNA upstream 549120 31528997 ~ 31578588 (-) True AMCG00014794
TU90581 other downstream 1554166 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 2619989 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19289978 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20154324 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 21635304 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 1283290 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1617585 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1617585 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1821981 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3789706 34769583 ~ 34769979 (-) True G73328

Expression Profile