RNA id: AMCG00014789


Basic Information

Item Value
RNA id AMCG00014789
length 2283
RNA type mRNA
GC content 0.38
exon number 3
gene id AMCG00014789
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31337113 ~ 31345430 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGATGGCGAATATAACTGTGCCCAGGCATCGCCTCACACCAAGGCGTCAGAAGATGTCCAAAGATGAATTGGAGAGGGGTGGGCAGAATGTGCTCTTGATCCTGAAAGGTCTTACAATGTCATCTGCCACTAATTTCACACAGAGCCTGGAGGAATCCCTGAAGAAGGTCTTGGTTGACTACCTGAGCAGCTGGAACAAGAATCAGACCCAGGCAAAGGAAATCCTGGACAAGCGTCTGGCGGAAGAAAACTTTGACAACGTCATCTGGTACCTGATGGTGATGATTGGCATGTTCGCCTTCATCATCGTGGCCATTTTGGTGAGCACGGTGAAGTCGAAGAGACGAGAGCACTCCGACGACCCCTACCACAAGTACATCGAGGAGGACTGGACGGCCAAGCTAAAGAATCAGATTCTCACCATGGACCATAACTTGCACACAAACCCCACGACAAAGTCCTACGAGGAGCCCTAATCACCATGACCTCTTCCCATTGACTGGCCATAGCAAAACTCAGAATCACAGTAGAGGAAGAGGTTCAGGAATTGTAGACCTGTAGCGCAGAAGACAGCTGATAGTTTAGCACCACCATGATTTCACCATCACAAAGTAAGCACAGAAGTTTTGCCATCTTTccttttccccctttttaaatATCACCTTTGCAAGacagttattaaaatatcaaCAATCAACACCTTGGAGCCAACTGTGTTGTAGTTGGACTGAGCAGTACTAGTACATTTAAGATCAGTACCAAAGATTTGTAACTAAAGTTGTGAATTAtactaattattttaagaatgtgATCTTTAATGCATTGTTGCTTTGTTTCAATCATtacattcaatcaatcaaataaataaatgggctGTCGAGCAACAATCACACTGTAATTGCCCTGGTGTTATGCcatggcaataaataaatcttaatctCATTGAATCATTGAAATGACTGGGTATTGATGATTCTTttttactgaagaaaaaaaaatcctctgcaagaaatgtaaaagtaagttatacagcttttaaataatgtattcttcttcttcaacTGGTTATCAACtttacaattaatatttaagCATTATAAGTTTACagaattaaataagttacataTAATATGCCCAGTATTTTACAAACTGTGGCATTGAAGTTGATGTAATTATACCAGAGACCCAATGCTGACATGTGTAATCAGATTACCATCAAGCTGTTTTTTCGATTGTGTAAGTAGGTTGTGTAgcaatgtaattgttttcacttttctgGTGCAATTCACTATACCCACTCTAGGTGGCAACGTTGTCCTGCTCCATAGCTCCCCAGCTTCTCCAGCCTGCATTCCTCCCAGTGTTAATTGGGAAAGTGACCCAGCTGCTGTGTGGCCTCTTGTTTACAGTGGGGGCTGTGTTCATACACAGATCAACAGCTGAGAAGCCCCAGGCACACAGTAGTTACATGCTCCATGTAACTCTACCTTCCATTGCAGTGTTTACAGCTCCACATTGATCAGAGATTTTATTTTCGCTAAACCAGGTTgtcacatgaaaaaaaaaaaaagttacaatcCTTCTGTATTCCCTGTGCTTAGTATTCTTCCAAAGTCTGTTAAGAAACTGTTAAACTCAGCTCACACATTTTCAAGGGCTTGTTGGAGTTCTTGTGGAAAACTAGTAAAAGTGTTAAATGTGATTAATGCTAAAGCATTGTCTACAAAAATGCACAGATCATTTGTCATCTCATCAAAACagtatttctctcaaattaaGAACCCACATTCCTCGTTTGCTTTATCATTActgctacatttttttaaatcgcCTTTAGCATGGTTTATTAAGTGTGTATCAGATTGTTAACTCATCAGTACAGTATTTCTACCTCATGGACACTGACAGCCAAAATGaatttaacataattttaaattaattaaaatgaacttaaTTTTAAGATGCGGTTAGCCTTTCTTTATGTGTCCATACGTCCACTCCCAAGCTATTCAAATGTTGTAGTCAAGGTAGATGAATCTTTCATCAGTAGGAGTTATAAATTGGGGAATTCATATggtatattcatattcatatggaattccAATCTGGCAATAGGATGTACATCATTAACGCGTTTGACCTTTTTGATGAGTTCACAtgactttaataaataaatccttcatTTGTATTAATGAGCGGAATGAACCGTAGTTTAAATTTACAATCTGTACataaaatttttaaaaaaactcacacaaattcataatcacaaaaataaa

Function

GO: NA

KEGG:

id description
K04896 KCNE2; potassium voltage-gated channel Isk-related subfamily E member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90971 lncRNA downstream 385738 30950110 ~ 30951375 (-) True G72791
TU90970 lncRNA downstream 389770 30946090 ~ 30947343 (-) True G72790
TU90944 lncRNA downstream 492165 30841523 ~ 30844948 (-) True AMCG00014775
TU90943 lncRNA downstream 492985 30841523 ~ 30844128 (-) False AMCG00014775
TU90845 lncRNA downstream 941775 30395139 ~ 30395338 (-) True G72693
TU91053 lncRNA upstream 116749 31462179 ~ 31463783 (-) True G72862
TU91063 lncRNA upstream 121062 31466492 ~ 31467056 (-) True G72868
TU91062 lncRNA upstream 135418 31480848 ~ 31485466 (-) True G72867
TU91073 lncRNA upstream 170000 31515430 ~ 31519849 (-) True G72874
TU91074 lncRNA upstream 170000 31515430 ~ 31519932 (-) False G72874
AMCG00014790 mRNA downstream 44378 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014791 mRNA downstream 57983 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014785 mRNA downstream 357236 30952471 ~ 30979877 (-) True AMCG00014785
AMCG00014782 mRNA downstream 411906 30922355 ~ 30925207 (-) True AMCG00014782
AMCG00014775 mRNA downstream 490313 30842042 ~ 30846800 (-) False AMCG00014775
AMCG00014796 mRNA upstream 124129 31469559 ~ 31471622 (-) True AMCG00014796
AMCG00014794 mRNA upstream 183567 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014795 mRNA upstream 248961 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014797 mRNA upstream 355197 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014806 mRNA upstream 424143 31769573 ~ 31789737 (-) True AMCG00014806
TU90581 other downstream 1938808 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3004631 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19674620 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20538966 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 22019946 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 917737 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1252032 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1252032 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1456428 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3424153 34769583 ~ 34769979 (-) True G73328

Expression Profile