RNA id: AMCG00014790


Basic Information

Item Value
RNA id AMCG00014790
length 1316
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00014790
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31279314 ~ 31292735 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTGTGgccttttgttagttttttaagCCACCCTTATTCTGTCTTTCTCACTTGGCCTTGAGAACATGCAGGTCACCTGGTTTTTGCTTGCGCCGCTTTGCCTTTACCTCGCCTCCTTTTGCAGCGCAGAAGAAGGACTCGAGTTCCCCAGCTTCGATGGAAAAGACCGGGTTATACACATCAATGCCAAAAACTACCAAAAGGCACTGAAAAAGTATGACATGCTGTGCCTCCTCTATCATGAGCCCAAGTTGTCCAGCAAGGTGCGGCAGAAGCAGTTTCAGATGACTGAGCTGGTGTTGGAGCTGGCTGCCCAGGTACTGGAAGATAAAGACATAGGGTTTGGAATGGTAGATTCCAAGAAAGATGCCAAAGTGGCTAAGAAACTTGGCCTGGAAGAAGAAGGCAGTATTTACGTGTTCAAAGACGAACGGGTGATCGAGTTCGATGGGGAGCTCTCTGCAGACACTCTTGTTGAGTTCCTTTTGGATCTGTTGGAAGACCCTGTGGAGCTCATTAGCAACTCCATGGAACTCAGGGCCTTCGACAGTATTGATGAGGCCATCAAGCTCATTGGGTTTTTCAAAGGAGAAGACTCTGAGCACTTCAAGGCGTTTCAAGAGGCAGCAGAAAATTTTCAGCCATTTATTAAGTTCTTTGCCACTTTTGATAAAGTCGTGGCAAAACAACTTACTTTGAAAATGAACGAGGTGGACTTCTATGAACCTTTCATGGAGGAACCCGTGACCATTCCTGGAAAGCCATACACAGAAGAGGAGATTGTGGAGTTTGTAAATGAACACAAAAGACCTACCCTGAGAAAGCTACGTGCAGAAGACATGTTTGAGACATGGGAAGACGACATGGATGGAATTCATATTGTGGCTTTTGCAGAGGCAGAGGATCCTGATGGCTTTGAGTTCCTTGAGATCCTGAAAGAAGTGGCCAGGGAGAACACCAACAACCCAGAACTGAGCATTGTGTGGATTGACCCAGATGACTTTCCACTGCTGATTACATACTGGGAGAAAACCTTCAAAATCGACCTCTTCAAGCCTCAGATTGGAGTGGTGAATGTTACTGATGCTGACAGCGTGTGGATGGACCTGGCAGATGATGAGGATCTGCCCAGCGCACAGGAGCTGGAGGACTGGATTGAGGACGTGCTGTCAGGGAAAGTGAACACGGAGGATGACGACGAGGAGGAGGACGATGAGGACGAAGAGGATGAGGACGAAGAGGATGAGGATGAAgacgaagaggaggaggaggaggatgaggatgaagacgaagaggaggaggatgacgaTGATGAT

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23445 CASQ2; calsequestrin 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90971 lncRNA downstream 327939 30950110 ~ 30951375 (-) True G72791
TU90970 lncRNA downstream 331971 30946090 ~ 30947343 (-) True G72790
TU90944 lncRNA downstream 434366 30841523 ~ 30844948 (-) True AMCG00014775
TU90943 lncRNA downstream 435186 30841523 ~ 30844128 (-) False AMCG00014775
TU90845 lncRNA downstream 883976 30395139 ~ 30395338 (-) True G72693
TU91053 lncRNA upstream 169444 31462179 ~ 31463783 (-) True G72862
TU91063 lncRNA upstream 173757 31466492 ~ 31467056 (-) True G72868
TU91062 lncRNA upstream 188113 31480848 ~ 31485466 (-) True G72867
TU91073 lncRNA upstream 222695 31515430 ~ 31519849 (-) True G72874
TU91074 lncRNA upstream 222695 31515430 ~ 31519932 (-) False G72874
AMCG00014791 mRNA downstream 184 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014785 mRNA downstream 299437 30952471 ~ 30979877 (-) True AMCG00014785
AMCG00014782 mRNA downstream 354107 30922355 ~ 30925207 (-) True AMCG00014782
AMCG00014775 mRNA downstream 432514 30842042 ~ 30846800 (-) False AMCG00014775
AMCG00014780 mRNA downstream 516253 30759157 ~ 30763061 (-) True AMCG00014780
AMCG00014789 mRNA upstream 44378 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014796 mRNA upstream 176824 31469559 ~ 31471622 (-) True AMCG00014796
AMCG00014794 mRNA upstream 236262 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014795 mRNA upstream 301656 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014797 mRNA upstream 407892 31700627 ~ 31707522 (-) True AMCG00014797
TU90581 other downstream 1881009 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 2946832 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19616821 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20481167 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 21962147 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 970432 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1304727 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1304727 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1509123 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3476848 34769583 ~ 34769979 (-) True G73328

Expression Profile