RNA id: TU91067


Basic Information

Item Value
RNA id TU91067
length 2842
lncRNA type sense_over
GC content 0.36
exon number 1
gene id AMCG00014793
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31512808 ~ 31523187 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttttactatttataggtatgtgtttgggtaaaattaacatttttgttttattctataaactactgacaacatttctcccaaattccaaatacaatatgaattaatgatttaagaaaaaattgcagtggtctcttaattttttccatagcTGTATGTGCTTAAACAACaagctgtatattttatacttgAGAAGTATCCCACATCTTGAGAGAGCTGTGattctacacttttaaaatatcaagCTGTTGTAAGTCCTCAACCACAGAACAGTGACGTTAGTTAAGGGTAAGCAAAGCAACAACACACATCTTAAAGAAAGGACTTGTTTATTAAGATTGTTCTCTTGACAGGTGTACATTACCGTACTGAACACGAGAGGTTTACATGGTAGATTAGTACCGAGGGGGGATCAGACAATCTCAattgtttgtatattaaaaaaagaaaaaaagcaattgcATGCTTTGGGGGGGGATTAAAAACTAATATTGGAAGTGAGAGCTATGgtacaaatgtgaaattatacAAACTTCTCccctttaaattaaatgagacCAACCCCCACCTCAACCCCAACCCCTCTCTAACCAAAGAGAAGTGCCAGAGCTTGCCTGGcctattttatttgaaacatttaagaCCATATGTTGTtacacaatttttgttttaataaatcctCTTTAATAATTTTAAGATCTGAATATAACCACACATGATACACTAATTATCTGATTAGAAAAAAGATACCttggcaaaaataaaagtacattagATACAACACAAGACCAGCAAAAGGAGTGTGTGACATCACACTGAGGAACACTGCCCTACCTTGATGCCTGTGATCAGCTGATCAGCTGAGCGTGGCAAACTGATTTCAAAGGAAACTGAAGCACCCCCGATACAGACAAACACGGTCTACACAGAAAAGGTTAGAGCAACATGTAGTTTCTGCAAAAGCTGTTGCCTCATTCAACCTAAGGTCTCTCACTGGAAGCTCAGTTAGTGATTCTAGAGACTGCCAGCGACTCCAAACAACTCCGAATGGGTTAATGACTGAAATTGGCTTCTATTGATAGTCACTACGCTGTATCTCGATCCACTTGTTCAAAAGTCATGCCTGAATGTAGCTGGCTCATTCCGTCCCATAAAGACTTCCCAAATCCATTACAAAGTACTTTAACATGATAAAGTAAAATGACTTATTTTGGAGCAAACTTATGTTATaaaaagccacacacacaaataacaagTGTGTTTTCTGGACTTCCACCTAGAAATGTCTAATGTTATTCTAAAAAAGAACCTTTGTCataacatttattgtttttaaacttaCAACTCCATAAATAGTACACATGCAAATATTTTGACCTTCCCAAAAGGTCCAGTGTCCTATGTTTTCTGAAACACACGTACATATATGTAccatatacattttcagaaaaggaTTCTCGGACATACGTTATTGTTCTAAAAAGATAGTGAGACTGAGTAGGTAAACTTTAGCTGAGCACAGAATGAAACCCTTAACAAAACTAGTAATCTCTTTATAGCCTTTGATTGTATTAGTGGCTTACAATGTTGGGTTGTTCATAGTTATATGTAAAATTAGGTGGGTGACTCAATCTACAACAGTTTGCCCAGGTCTAATTGAGAAAATAAGTTCAGTTAGAACCTGCAGGgtgacaaacaaaaacaacattattcagAGGACTTGAGTTTGGTGGTGTTAGCTTACGTTAAATATCAGGAGCTTGTGCAAAAGATGGGTGCAAAAGATTGAAATTTGTAACCAGAGGCCTTGTCTAGAAGCTCCTGCACTTCCAGATTTAATTGTGAAGGTCTCCTGTCTGAGTTATGACACATGGTAACCACCCTAGTTTGTCTATTTAGTATTGATGGAATTACACTGGGTGACATGGTGTTAGTTACTAGTGCAGCAAGACAGATCAGTGACCTGACGATGGCTGAACAAGGTTGGGATGCTGCCCTTACCTGGAGAGTTTACAACCTGTCAGTTTACATCAGAGAGCCTTTGTAGATGTGAGAAGctaattttgcttttttttattttttcttctaatcaCTTAGATGGGTAAGAATGATCCTGAGGTCAATATGTACAATCAACACATCAGTACTAGAATGAGCCAGCTAAATCTGAGCTGAAGAAAAGATGTTTCAAGCAAGTCCGAAATAACAGCTTTTGGGCCAGTGACACCCCAGCCATCCAAACTAAATGAGCATTGCCTTtacactgaaagaaaacacCTACACAATTTTAGTAAAATGTAGgtgcagtttaaattaaatttgtccAGAAAAGTTATGAATCACCATGTGAAAGTTGTCATGGTATTAACAAAAAGAGGCCCTTTAAGTGTTCCCTTTAAGGATGTATGTTTGTTGAAGTGCAATTTATAGCTTTTTACAGTGTttgtaaatgttacaaaataccacccccccaccttaATACTACTCCacactatattaaaataaattttcGCAGTATCATTTTCCCTTTCgaggaagaaaatacaaatcaatttaaattactgaTTACAGAactccaaaatatatatatatatatatatgattttcatGGCAAACATTTGGAATCTAACCGCAACTCTTTACAAGCCAACACGCACAGCAAAGCTACACTCACTTGGATTTCATTGCAAtgatgagggaaaaaaagacaaagctaCTGATCTCGAAACGTGCAAACAGCACAGGCATCCAAAATAAAACCGCTCacgtatataaaaaaataaaatacattttcaaatttgtcaaaaataaagagattagtctttattaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91052 lncRNA upstream 56535 31462146 ~ 31463811 (+) True G72861
TU90999 lncRNA upstream 232912 31278087 ~ 31287434 (+) True G72815
TU90997 lncRNA upstream 237488 31278087 ~ 31282858 (+) False G72815
TU90976 lncRNA upstream 372469 31143423 ~ 31147877 (+) True AMCG00014786
TU90969 lncRNA upstream 516558 31003372 ~ 31003788 (+) True G72789
TU91076 lncRNA downstream 1128 31524315 ~ 31592105 (+) True G72875
TU91126 lncRNA downstream 178975 31702162 ~ 31702435 (+) True G72911
TU91127 lncRNA downstream 179959 31703146 ~ 31703573 (+) True G72912
TU91145 lncRNA downstream 222336 31745523 ~ 31746900 (+) True G72926
TU91158 lncRNA downstream 267714 31790901 ~ 31792354 (+) False AMCG00014799
AMCG00014792 mRNA upstream 189671 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014788 mRNA upstream 212084 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014787 mRNA upstream 256091 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014786 mRNA upstream 374209 31145769 ~ 31146137 (+) False AMCG00014786
AMCG00014783 mRNA upstream 475605 31041891 ~ 31044741 (+) True AMCG00014783
AMCG00014800 mRNA downstream 158344 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014801 mRNA downstream 184061 31707248 ~ 31709519 (+) True AMCG00014801
AMCG00014798 mRNA downstream 204099 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014804 mRNA downstream 230089 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014805 mRNA downstream 240993 31764180 ~ 31765038 (+) True AMCG00014805
TU90967 other upstream 523983 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 540094 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 541521 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 714605 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1668525 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 193931 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 1019323 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1841568 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2715747 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3256935 34780122 ~ 34780590 (+) True G73329

Expression Profile