RNA id: AMCG00014794


Basic Information

Item Value
RNA id AMCG00014794
length 3135
RNA type mRNA
GC content 0.56
exon number 21
gene id AMCG00014794
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31528997 ~ 31578588 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGAGCCCAGGAGGATGACCCGGCAGGCTGGCCAGACCAAGCGCAGGAGCTGGGAGACGAGCCCCCAGCCCCCCTGCCACCCCAGCAGCCGTGGATGAAGAGAGTGCAGGAGGACGATGGCAGGGGTCGCATGGAGATGCAGGACAAACTGAACAAGCTTTTCATCCAGCCTCCCGAGCCTGGGATGCTGCCCGCCCAGTCTGCATGGCCCACCACAGAAAAGTCTCCTGTGACCGGCTTTGACCAGGATAAAGTGAAGGTGGTCTTCTACAGAGCTTTGTATCCGTTTGACGCCAGAAGTCACGATGAGATCACAATCCAGCCTGGGGACATTATTATGGTGGACGAGAGTCAGACGGGGGAACCTGGCTGGCTGGGAGGGGAGCTGAAGGGAAAAACTGGCTGGTTCCCCGCCAACTATGCAGAGAAGATGCCAGAATCGGAGGTCCCCGCCAGCCTCCGGTCTGGAGCGGGTTCTGCGCCAAAACTGGCCGCCAGGGTGACTCCCACCAGCACTGTGACCCAACCCCAGCCTCAGCCCCAGGTTCAAGCGCAGCCCCAGGTTCAAGTGCAGCCCCAGGTCCAGGCCCTGCCTCAGCCCCAGCCCCAACCCCAGCCCCAGCCTCAGCCTCTGCCTCATCCACCCCAGCCCCTCCCCGCCGAGTCTGCCGCTCCTCCTCCAGCAACCACCGCAGCTTCCACCAGCAACTGGGCAGACTTCAGCTCCACGTGGCCGTCCAACAACACAGAGAAGGTGGAGGGTGACGGGTGGGATGCCTGGCCCACTCAACCCTCCTTGACTGTGCCCAGTGCCGGGCAGCTCCGCCAGCGATCAGCCTTTACCCCTGCCACCATCACTGGCTCCTCGCCCTCTCCCGTGCTGGGGCAGGGAGAGAAGGTGGAGGGACTGCAGGCACAGGCTCTGTACCCTTGGCGAGCCAAGAAGGACAACCACCTGAACTTCAACAAGAACGACATCATCACAGTGCTGGAGCAGCAGGACATGTGGTGGTTCGGGGAGGTGCAGGGGCAGAAGGGCTGGTTCCCCAAGTCTTATGTCAAACTCATCTCTGGCCCCATGAGGAAATCCATGAGTATCGAATCTGGGTCATCTGACAGTCCTCCAAGCATGAAGCGACCAACTCCTTCACCCAGTAAACCCACAGATCCAGGAGAAGAGTATATAGCAATGTACACCTATGAGAGCAACGAGCAGGGTGACCTGACATTTCAGCAAGGGGATGTGATTCTCGTAACAAAGAAGGAAGGCGATTGGTGGACCGGGGTGGTAGGAGACAAAACAGGAGTGTTTCCTTCAAATTATGTGAAACCCAAGGATTCAGAGGGAGTTGGTCCAGCTGGGAAGACAGGGAGTCTGGGAAAGAAGCCAGCCACGGGGGCCGAGCAGCTCACCCTGGCTCCGGGGCAGCTCATCCTCATCCGGAAGAAGAACCCAGGAGGCTGGTGGGAAGGGGAATTACAGGCCAGAGGAAAGAAACGGCAAATCGGATGGTTCCCCGCAAATTATGTGAAATTGTTGAGCCCAGGTACAAGTAAAACCACACCCACGGAGCCCCCAAAACCCACACTACCCAGTGCAGtatGCCAGGTGATAGGCATGTACGACTATATAGCACAGAATGACGACGAGCTTGCATTCGGGAAGGGGCAAATAATAAACGTCTTGAGCAAGGAGGACCCTGATTGGTGGAAAGGAGAGCTCAACGGAAACGTGGGCCTGTTTCCATCCAACTACGTCAAGCTGACAACAGACTCGGACCCCAGCCAGCAATGGTGTGCTGATCTCCACCTTCTGGACATGTTGACTCCCACGGAGAGGAAGAGGCAGGGCTACATCCACGAGCTGATCGTGACGGAGGAGAACTACATCTTTCAGAAGCCGTTGCTGGAGTCGGAGTTGCTGACTGAGAAGGAGGTGGCAATGATTTTTGTCAACTGGAAGGAACTTATCATGTGCAACATCAAGCTGCTGAAGGCTCTGCGCGTACGCAAGAAGATGTCAGGGGAGCGGATGCCAGTCAAGATGATCGGGGACATCCTGACTGCCCAGCTTCCCCACATGCAGCCCTACATCCGCTTCTGCAGCTGCCAGCTAAACGGAGCCACCCTCATCCAGCAGAAGACAGATGAAGTGCCTGAGTTCAAGGACTTCGTCAAGAGGTTAGCAATGGACCCGCGCTGCAAGGGGATGCCGTTGTCAAGTTTTCTCCTGAAGCCCATGCAGAGAGTCACACGGTATCCACTCATCATCAAAAATaTTTTGGAGAACACTCCGGAGAACCACCCCGACCACAGCCACCTGAAGCAGGCCCTGGAGAAGGCAGAGGAGCTCTGTTCCCAGGTGAACGAAGGAGTCAGGGAGAAGGAAAACTCTGACCGGCTGGAGTGGATACAGGCCCATGTGCAGTGCGAGGGTCTCTCTGAGCAATTAGTATTCAACTCTGTGACCAACTGTCTGGGGCCACGCAAGTTCCTTCACAGCGGAAAGCTCTACAAGGCCAAGAGCAACAAGGAGCTGTATGGCTTCCTCTTCAACGATTTCCTGCTACTTACGCAGATCATCAAACCTTTGGGCTCCTCCGGCACCGACAAGGTGTTCAGCCCCAAGTCCAACCTGCAGTACAAGATGACTGCCTGGGTGCAGAAGATCAAAGCTGCCTCTGAACTGTACATTGAAACtgagaaaaagaagagagaaaaggcaTATTTggTTCGTTCGCAGAGGGCTACAGGCATTGGCCGGCTAATGGTGAATATAGTGGAAGGAATTGAACTAAAGCCCTGCAGGTCACATGGGAAGAGCAACCCATACTGTGAGGTGACCATGGGCTCCCAGTGCCATATTACCAAGACCATGCAGGACACTTTGAACCCCAAGTGGAATTCCAACTGCCAGTTCTTCATCAAGGACCTGGAGCAGGACGTGCTGTGCATTACCGTGTTTGAGCGGGATCAGTTCTCCCCTGACGACTTCCTGGGAAGGACTGAAATCCGAGTGGCTGACATAAAGAAAGATCAGGGTTCAAAGGGACCAATCACCAAGAGGCTACTGCTCCATGAAGTCCCTACAGGAGAAATTGTAGTACGACTGGATCTACAGCTGTTTGATGAACCA

Function

GO: NA

KEGG:

id description
K20045 ITSN; intersectin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91074 lncRNA downstream 9065 31515430 ~ 31519932 (-) False G72874
TU91073 lncRNA downstream 9148 31515430 ~ 31519849 (-) True G72874
TU91062 lncRNA downstream 43531 31480848 ~ 31485466 (-) True G72867
TU91063 lncRNA downstream 61941 31466492 ~ 31467056 (-) True G72868
TU91053 lncRNA downstream 65214 31462179 ~ 31463783 (-) True G72862
TU91136 lncRNA upstream 119067 31697655 ~ 31698012 (-) True G72919
TU91232 lncRNA upstream 318352 31896940 ~ 31898945 (-) True G73005
TU91282 lncRNA upstream 677567 32256155 ~ 32256775 (-) True G73046
TU91285 lncRNA upstream 686544 32265132 ~ 32265424 (-) True G73049
TU91304 lncRNA upstream 779114 32357702 ~ 32362393 (-) True G73066
AMCG00014796 mRNA downstream 57375 31469559 ~ 31471622 (-) True AMCG00014796
AMCG00014789 mRNA downstream 183567 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014790 mRNA downstream 236262 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014791 mRNA downstream 249867 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014785 mRNA downstream 549120 30952471 ~ 30979877 (-) True AMCG00014785
AMCG00014795 mRNA upstream 15803 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014797 mRNA upstream 122039 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014806 mRNA upstream 190985 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014809 mRNA upstream 388856 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014813 mRNA upstream 692097 32270685 ~ 32285936 (-) True AMCG00014813
TU90581 other downstream 2130692 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3196515 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19866504 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20730850 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 22211830 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 684579 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 1018874 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 1018874 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1223270 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3190995 34769583 ~ 34769979 (-) True G73328

Expression Profile