RNA id: AMCG00014795


Basic Information

Item Value
RNA id AMCG00014795
length 1797
RNA type mRNA
GC content 0.56
exon number 14
gene id AMCG00014795
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31594391 ~ 31620377 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCCTGGATGCCTGGGTCATCACTGTGGAGGAGCGAGCGAAACACGACCAGCAGTTCCACAGCTTAAAACCCACGGCAGGGTTCATCACTGGTGATCAGGCAAGGAATTTCTTTCTCCAGTCTGGGTTGCCCCCTCCCATTCTTGCACAAATATGGGCGCTGGCTGACCTGAACAATGATGGCAAGATGGACATACACGAGTTCTCCATCGCCATGAAGCTGATCAAACTGAAGCTCCAGGGccatcctcttcctccctcactTCCTCCTGTGATGAAACAGCCCCCCCTCGCTGTCCCCACCGCCTCTCTGTTTGGTATAGGGGGCATGGCTGCTATGCCAGGTATCCCTGGAGTGGCCCCAGTGCCAATGGCCCCACTGCCAGGAGTGGGAATGTCCCCTCCTCTGCATTTGCTTTACCGCGTTTACCTAAACCTGTCTgaattattcttttttctttcccacacGCAAACAGCTGCATCACTTAACAAAACTGCTTCCTTCAGCCGTTCCAGTACAAAACTACAAAAGGCACAGTCCTTCGATGTTCCAACTGCCCCAGCTGCCCCTGCACTCTCTGAATGGGCAGTCCCTCAGTCTTCACGGCTGAAGTACCGGCAGCTCTTCAACAGCCATGACAAAATGATGAGTGGGCACCTAACAGGGCCACAGGCAAGAACCATCCTCATGCAGTCTAGTTTACCACAAGCTCAATTAGCATCTATATGGAACCTCTCGGATATCGACCAGGACGGCAAGCTGACTGCAGAGGAGTTCATCCTAGCCATGCATTTGATAGACATGGCTATGTCAGGCCAGCCCCTGCCTCCCGTTCTCCCTCCAGACTTCATCCCCCCTGCTTTCAGAAGAGTTCGCTCTGGAAGTGGCATCTCCACCACCAGTCTACATTTGGTGGACCAGAGGGTCCAGGAGGAGCCTGTTGAGGAGGAGCTGCCCCCAGAAAAGAAGCTTCCAGTGACGTTCGAGGACAAGAAACGGGAGAACTTTGAACGGGGAAACCTGGAGTTGGAGAAACGGCGGCAGGCCCTTCTGGAGCAGCAGCGCAAGGAGCAGGAGCGCCTGGCAACCCTGGAGCGGCAGGAGCAGGAGCGGCGTGAGCGCGAGCGGCTGGAGCAGGAGCGGCGGCGGCAGCTGGAACTGGAGAAGCAGCTGGAGAAGcagagggagctggagaggCAGCGCGAGGAGGAGCGCAGGAAAGAGATCGAGAGGAGAGAGGCAGCCAAAAGGGAGCTTGAGAGGCAGCGGCAACTTGAGTGGGAGAGGAACCGGCGCCAAGAGCTGCTCAACCAGAGGAACAAGGAGCAGGAGAACATAGTGGTCTTAAAGGCCAGGAAGAAGACGCTGGAGTTTGAACTGGAGGCTCTCGTAGGTTTCCGCCGTTCCTGTGAGGCCTTGCCCCAAACTAATGACAAGAAGCACCAGCTGGAAGGGAAGCTGCAGGACCTGCGGTTCCGCCTGTCGGCCCAGCGGCACGAGATCGAGACCACGAACAAGACGCGCGAGCTTCGGATCGCTGAAATCACGCACCTCCAGCAACAGCTCCAGGAATCGCAGCAAATGCTTGGGAGACTGATACCTGAGAAGCAGTCCCTCAATGACCACTTAAAACAGGTGCAGCAAAACAGTTTGCATAGAGATTCCCTCCTAACCCTCAGAAAGGCTTTAGAAGTGAAGGAGAGCACACGACAACAGCTGCGAGATCAGCTGGATATAGTGGAGAAGGAGACCCGGTCCAAACTGCTGGAGATAGACGCCTTCAATAATCAGCTGAAG

Function

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20045 ITSN; intersectin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91074 lncRNA downstream 74459 31515430 ~ 31519932 (-) False G72874
TU91073 lncRNA downstream 74542 31515430 ~ 31519849 (-) True G72874
TU91062 lncRNA downstream 108925 31480848 ~ 31485466 (-) True G72867
TU91063 lncRNA downstream 127335 31466492 ~ 31467056 (-) True G72868
TU91053 lncRNA downstream 130608 31462179 ~ 31463783 (-) True G72862
TU91136 lncRNA upstream 77278 31697655 ~ 31698012 (-) True G72919
TU91232 lncRNA upstream 276563 31896940 ~ 31898945 (-) True G73005
TU91282 lncRNA upstream 635778 32256155 ~ 32256775 (-) True G73046
TU91285 lncRNA upstream 644755 32265132 ~ 32265424 (-) True G73049
TU91304 lncRNA upstream 737325 32357702 ~ 32362393 (-) True G73066
AMCG00014794 mRNA downstream 15803 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014796 mRNA downstream 122769 31469559 ~ 31471622 (-) True AMCG00014796
AMCG00014789 mRNA downstream 248961 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014790 mRNA downstream 301656 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014791 mRNA downstream 315261 31261716 ~ 31279130 (-) True AMCG00014791
AMCG00014797 mRNA upstream 80250 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014806 mRNA upstream 149196 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014809 mRNA upstream 347067 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014813 mRNA upstream 650308 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014814 mRNA upstream 701597 32321974 ~ 32322759 (-) True AMCG00014814
TU90581 other downstream 2196086 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3261909 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 19931898 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20796244 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 22277224 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 642790 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 977085 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 977085 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1181481 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3149206 34769583 ~ 34769979 (-) True G73328

Expression Profile