RNA id: AMCG00014797


Basic Information

Item Value
RNA id AMCG00014797
length 1368
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00014797
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31700627 ~ 31707522 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCATTGTTAATAAGCACGTCCAGACCCCCGTATTTCTCCTGCAAGAAGTCCCTAACGCTTCGTCTGCTGTCGGGGTTGGTGATGTCCAGCTGGTGGAACAAGGGGTTCAGTCCCTCGGACTTCAAGCTCCGCACCGCGTCCGTCCCCCGCCCCACGTCCCGGGCTGTCAGGTACACGTCCCCCGCGAACTGCTGGCACAGAGCCCGCACCACCGCCAACCCGATGCCTTTGTTAGATCCGGTCACTATTACTCTAGGTCACGAATATCAGTTTGTGGAATTGAGAAGATGGCTAAAGCTCAGAGGCTTCAACTCCAAATACTTAATTCCAGCGCATTTTCCAGgcaCTGGAAGAGGACTTATGACCACACAGCCCATTAAAgCAGGTGACTTGATCATTTCATTACCAGAGAAGTGTCTGCTGACCACAACTACAGTGCTGGGAAGTCCCCTTGGTCAATAcattaaaagATGGAAACCCCCTGTATCTCCTTTGATGGCGCTTTGCACTTTCCTCATCTCTGAAAGACACCTCGAGGCCAAATCTCTGTGGAAACCATACATTGACGTCCTACCTAAAGTATACACGTGCCCCGTGTATTTCTCCCAAGAGGTGGTAAACCTTTTACCTGGCACTCTCCGAAAGAAGGCGTTtgagcagagagacacagtgcaGGAGCTGTATCTGtcttcattcatgttttttaagtCCCTTCAGCCTTTGTTCAGCCAGTCAGTGGAGGATGTCTTTACCCATGATGCAATGCGCTGGGCTTGGTGCAGCATTAATACCCGCACGGTGTACATGAAACACCCTCAGAGTGAGTTCCTCTCCAGAGAGGCTGATGTGTACGCCCTGGCTCCCTACCTCGACCTCCTCAATCACAGTCCTGAAGTGCAGGTGGAAGCTGCATTTAACGAGAAGACCAGATGCTACGAGATCAGAACAGGCCCAGGGTGCAGGAAGTATGAGCAGGCCTTCATCTGCTATGGGCCTCATGACAACCAGCGTCTATTGCTGGAGTATGGCTTCATTGCCAAGGGCAACCCTCACAGCGTTGTTTATATTGACCGAGATGCCCTTCAGTCATGCCTTACAAGAGGAGACAAGCAGCTGACCCAAAAGCTGTTATTGCTAAAGGAGAATAACTTGTTAGAAAACTTGACATTTGGGTTGGATGGGCCTTCCTGGAGGTTGCTGACAGCCCTCAGACTGCTTTCCCTCAAGCCCGTTGAGTTCACCTCCTGGAAAAGCGTCTTGCTTGGAGCTGCAGTCTCGGCTGACAGTGAGAAGCGAAGTTTGAGCCTGGCTGGATTTTTGTGTCGGGGCCTCTTGGATGAGAACAGCCAAGTCTTAGAGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91136 lncRNA downstream 2615 31697655 ~ 31698012 (-) True G72919
TU91074 lncRNA downstream 180695 31515430 ~ 31519932 (-) False G72874
TU91073 lncRNA downstream 180778 31515430 ~ 31519849 (-) True G72874
TU91062 lncRNA downstream 215161 31480848 ~ 31485466 (-) True G72867
TU91063 lncRNA downstream 233571 31466492 ~ 31467056 (-) True G72868
TU91232 lncRNA upstream 189418 31896940 ~ 31898945 (-) True G73005
TU91282 lncRNA upstream 548633 32256155 ~ 32256775 (-) True G73046
TU91285 lncRNA upstream 557610 32265132 ~ 32265424 (-) True G73049
TU91304 lncRNA upstream 650180 32357702 ~ 32362393 (-) True G73066
TU91322 lncRNA upstream 723075 32430597 ~ 32430951 (-) True G73082
AMCG00014795 mRNA downstream 80250 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014794 mRNA downstream 122039 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014796 mRNA downstream 229005 31469559 ~ 31471622 (-) True AMCG00014796
AMCG00014789 mRNA downstream 355197 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014790 mRNA downstream 407892 31279314 ~ 31292735 (-) True AMCG00014790
AMCG00014806 mRNA upstream 62051 31769573 ~ 31789737 (-) True AMCG00014806
AMCG00014809 mRNA upstream 259922 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014813 mRNA upstream 563163 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014814 mRNA upstream 614452 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014816 mRNA upstream 794795 32502317 ~ 32555533 (-) True AMCG00014816
TU90581 other downstream 2302322 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3368145 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 20038134 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20902480 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 22383460 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 555645 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 889940 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 889940 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1094336 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 3062061 34769583 ~ 34769979 (-) True G73328

Expression Profile