RNA id: AMCG00014801



Basic Information


Item Value
RNA id AMCG00014801
length 750
RNA type mRNA
GC content 0.58
exon number 3
gene id AMCG00014801
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31707248 ~ 31709519 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCGACTCCTAGAGTTGCACTAGTGACCGGATCTAACAAAGGCATCGGGTTGGCGGTGGTGCGGGCTCTGTGCCAGCAGTTCGCGGGGGACGTGTACCTGACAGCCCGGGACGTGGGGCGGGGGACGGACGCGGTGCGGAGCTTGAAGTCCGAGGGACTGAACCCCTTGTTCCACCAGCTGGACATCACCAACCCCGACAGCAGACGAAGCGTTAGGGACTTCTTGCAGGAGAAATACGGGGGTCTGGACGTGCTTATTAACAATGCTGCCATTGCCTTCAAAGTGGTTGACCCAACGCCATTTGCAGTTCAGGCAGAAGTGACCCTCAACACAAACTTCTTTGCCACTAGAGACCTCTGCAACGAGCTTCTTCCCATCATCAAGCCAAGAGGCAGGGTGGTAAATGTGTCCAGTGTGGCTGGCTCCATGGCTCTGAAGCAGTGCAGTCAGGAACTGCAGGCCAGGTTCCGGAGTAAAGACATCAGCGAGGAGGAGCTGGACAGTCTGATGCAGAGCTTTGTGGAGGAAGCCAAGAGCGGTGTACACACTCAGCGAGGGTGGCCCAACTGGGGCTACGGAGTGTCCAAAATCGGGGTAACAGTCCTCTCCAGGATCCAGGCCTGGAAGATCCAGAGAGAGAGGCCTCAAGACAACATCCTGATCAATGCCTGCTGCCCCGGCTGGGTGAGGACGGATATGGCGGGGCTGCAAGCCACCAAATCCCCAGATGAGGGGGCCGTCACCCCC

Function


GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00079 CBR1; carbonyl reductase 1

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91127 lncRNA upstream 3675 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 4813 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 115143 31524315 ~ 31592105 (+) True G72875
TU91067 lncRNA upstream 184061 31520346 ~ 31523187 (+) True AMCG00014793
TU91052 lncRNA upstream 243437 31462146 ~ 31463811 (+) True G72861
TU91145 lncRNA downstream 36004 31745523 ~ 31746900 (+) True G72926
TU91158 lncRNA downstream 81382 31790901 ~ 31792354 (+) False AMCG00014799
TU91238 lncRNA downstream 246733 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 256403 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 257837 31967356 ~ 31969205 (+) True G73018
AMCG00014800 mRNA upstream 11075 31681531 ~ 31696173 (+) True AMCG00014800
AMCG00014793 mRNA upstream 186844 31512808 ~ 31520404 (+) False AMCG00014793
AMCG00014792 mRNA upstream 376573 31312973 ~ 31330675 (+) True AMCG00014792
AMCG00014788 mRNA upstream 398986 31297750 ~ 31308262 (+) True AMCG00014788
AMCG00014787 mRNA upstream 442993 31241301 ~ 31264255 (+) True AMCG00014787
AMCG00014798 mRNA downstream 17767 31727286 ~ 31741350 (+) True AMCG00014798
AMCG00014804 mRNA downstream 43757 31753276 ~ 31763835 (+) True AMCG00014804
AMCG00014805 mRNA downstream 54661 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014803 mRNA downstream 56545 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014799 mRNA downstream 81434 31790953 ~ 31798463 (+) True AMCG00014799
TU90967 other upstream 710885 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 726996 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 728423 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 901507 30764351 ~ 30805741 (+) False AMCG00014777
TU90740 other upstream 1855427 29851450 ~ 29851821 (+) True G72605
TU91144 other downstream 7599 31717118 ~ 31754930 (+) True G72925
TU91344 other downstream 832991 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1655236 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2529415 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 3070603 34780122 ~ 34780590 (+) True G73329

Expression Profile