RNA id: AMCG00014806


Basic Information

Item Value
RNA id AMCG00014806
length 1500
RNA type mRNA
GC content 0.55
exon number 15
gene id AMCG00014806
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31769573 ~ 31789737 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCAGTTCAGCTTTGCTTTTGTTCAGGGTGTTTCTGCACAAACTCTGCAGAACACTGTGATACCCCTCATCAGCCTGCTGAAGGAGTCCGTGCAGCTCAACCTGGCTCCACCGGGCTACTTCCTGCTCCTCGGGCACATTACTGGTGTAGTGTGCTCTGAAGGGTCATCGCTGGAGCAGACCAGCTGGCTCAGTCGTAACCTGGAAGTGAAAGCTCAACCACAGGTGTCTCTGGAGGAAGAGGACCCAGACATGGATTTATACGaTTGTGCTGCACAGGCCTCTGCCATGGTGTCGTCCTCAGTGCCttcagtgtacagtgtgcaAGCTCTCACTCTCCTGGCTGAGGTGCTGGCCCCTCTTTTGGACATGGTGTACCGCAGCGATGAGAAGGAAAAGGCTGTGCCACTCATCTCCAGACTCATGTATTACGTGTTTCCTTACCTGAAAAACCACAGTGCCTACAATGTGCCCAGCTTCCGAGCCAGTGCCCAGCTCCTGAGCAGTCTGAGTGGGTACGCCTACACCAAGAGAGCCTGGAAGAAAGAGGCCTCTGAGCTCTTCATGGACCCGCTCTTCTTTCAGATGGACACCACCTGTGTCTCACActgGAAGTCCATCGTAGATCATCTTCTGACTCATGAGAAAACCATGTTCAAAGACCTGATGAGTATGCAGAGTAGCTCTCTGAAGCTGTTTCCCAACTACGAGCAGAAGGCCATGCTTTTGAAGCGCCAGGCCTTTGCGATCTTTAGTGGAGAGCTGGACCAGTACCATCTTTACCTGCCTCTCATCCAAGAGCGCCTCACAGAGAACCTGCGATTGGGCCAGACACCAAGTGTCGCTGCACAAATGTTTCTCACCTTCCGGGTCCTTCTGCTGCGCATTTCCCCGCAGCACCTCACTTCCCTGTGGCCTATCATGGTAACCGAGCTGATCCAGGCCTTTGATCAGCTGGAGGAGTGTTTGATTGAAGAAGAGATGACAAACAAGTCAAGTGGAACACAGGCAGTGGAGGTGAACGGCTGCACCCTCACCTTCCCACAGACTGAGTTGGATTTTTTTCTGTCTGCCTGCAAGTTCCTGGACACAGCCCTCTCCTTCCCCCCCGACAGGATGCCTTTGTTCCAGATGTACCGCTGGGCCTTCGTGCCAGAGGTGGATGCTGACGGCTACAGCGGCCCTGGGAACAGCCTTGTGGAGGTGGACCAGGAGTGCAAACCCCGCATCGTCAGGATTATGGAACGTCTCCACAAAAGATACGGGGATCTCAATGGAGTGAGTGAGGGGAGCCATGTCAAGCACCTGGAGTTCCCCCTGTTGACCCTGCCCACCATCTCCAACATCATGCAGCTAGTCTCTTTCTTCAAGATCCTGAGCTGCAACTTCAAAGGGCCAGGCACCAGGTCCATGTCTGTGCCCACTGTCGAGTATCCTGCCCCCAACAGCGAGGCGCCGCCACAGACGCCATCACTTGCACGCCGTACTGCGCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91136 lncRNA downstream 71561 31697655 ~ 31698012 (-) True G72919
TU91074 lncRNA downstream 249641 31515430 ~ 31519932 (-) False G72874
TU91073 lncRNA downstream 249724 31515430 ~ 31519849 (-) True G72874
TU91062 lncRNA downstream 284107 31480848 ~ 31485466 (-) True G72867
TU91063 lncRNA downstream 302517 31466492 ~ 31467056 (-) True G72868
TU91232 lncRNA upstream 107203 31896940 ~ 31898945 (-) True G73005
TU91282 lncRNA upstream 466418 32256155 ~ 32256775 (-) True G73046
TU91285 lncRNA upstream 475395 32265132 ~ 32265424 (-) True G73049
TU91304 lncRNA upstream 567965 32357702 ~ 32362393 (-) True G73066
TU91322 lncRNA upstream 640860 32430597 ~ 32430951 (-) True G73082
AMCG00014797 mRNA downstream 62051 31700627 ~ 31707522 (-) True AMCG00014797
AMCG00014795 mRNA downstream 149196 31594391 ~ 31620377 (-) True AMCG00014795
AMCG00014794 mRNA downstream 190985 31528997 ~ 31578588 (-) True AMCG00014794
AMCG00014796 mRNA downstream 297951 31469559 ~ 31471622 (-) True AMCG00014796
AMCG00014789 mRNA downstream 424143 31337113 ~ 31345430 (-) True AMCG00014789
AMCG00014809 mRNA upstream 177707 31967444 ~ 31969223 (-) True AMCG00014809
AMCG00014813 mRNA upstream 480948 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014814 mRNA upstream 532237 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014816 mRNA upstream 712580 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014820 mRNA upstream 839095 32628832 ~ 32641932 (-) True AMCG00014820
TU90581 other downstream 2371268 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 3437091 28329739 ~ 28332482 (-) True G72236
TU87063 other downstream 20107080 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 20971426 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 22452406 9310451 ~ 9317167 (-) True AMCG00014328
TU91283 other upstream 473430 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 807725 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 807725 32597462 ~ 32619149 (-) False G73127
TU91480 other upstream 1012121 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2979846 34769583 ~ 34769979 (-) True G73328

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073339 False 5553 mRNA 0.46 23 NC_007120.7 33174064 ~ 33195586 (+)