RNA id: AMCG00014808


Basic Information

Item Value
RNA id AMCG00014808
length 3384
RNA type mRNA
GC content 0.43
exon number 14
gene id AMCG00014808
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31896940 ~ 31915838 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAATCATTCGGAATGTTTCGGAAAATACGGAAGCGCGTCGGATATTTTCGTCTCTGAATATGGTTATGGCCGGCGTGTCCGGAGTGTGTCATACCCGCCTGAGCGCGGGAAACTCAGCTGTTTAGAACTTCAGCAGAACAGAAAAGGAAGCAAAACGGAATCTGGAATCTGCTAAACAGGTGATCCAGAAATGAAGGTTGTCACTTGTGAGATAGCGTGGCATAACAAGGAACCAGTGTATAGCATCGACTTCCAGCATGGAGGAGATGGAAAGATCCATAGACTGGCTACAGCAGGAGTAGACACCACTGTTCGGTTGTGGAAAGTGGAAAAGGGGCCAGACGGAAAGGCCGTTGTGGAGTTCTTGTCCAACTTGGCACGGCACACGAAGGCAGTCAACGTGCTAAACGACAGCAAAGAGCCAGAACAGGCTGGATTTCAGGAGGACGAGGATGCTCAGCTCAACAAGGAATGCTGGACTGTGGTTAAAACACTTCGTGGACACATAGAAGATGTCTATGACATCTCTTGGACCACGGATGGAAACTTCATGGTGTCTGGATCAGTGGACAACACTGCTATCATGTGGGACATTAATAAAGGACAGAAGATTTCCATTTTCAATGACCACAAGAGCTATGTACAGGGAGTGAGCTGGGACCCTTTGGGCCAGTACATTACTACCCTCAGCTGTGACAGGGTGATGAGAGTGTACAGCACGCAAACAAGGAAAAAGACCTACATTGTGAAGAATTACAGAATGTTTCATGATGACAGTATGAGGTCTTTCTTCCGTCGCCTCACGTTCACACCAGATGGGTCTTTGCTGCTTGCTCCAGCCGGTTGCGTCGAAGCTGGAGAAAATGTCACCAACACAACTTATGTTTTCTCAAGAAAAAACCTGAAAAGACCCATAGCACATCTCCCATGCCCAGCAAAAGCCACTCTAGCAGTGCGGTGCTGTCCAGTCTACTTTGAACTGCGGAACTCAAAAAGCGAAGATGGGTCCACCCTGGAGCTGCCGAATGTGTTCAAGCTGCCCTACCGGTTAGTGTTTGCTGTTGCCTCTGAAGACTCTCTGTTCCTGTATGATACCCAGCAGACCATCCCTTTTGGGTCCAAGGATGGCTCATTCCTGGCCGTGTCCTCGACAGATGGCTACTGTTCCTTCGTGACATTCGAGGCTGGCGAGCTGGGCACTCCCCTGAAGGAGAAGCCCACACTGGAGGTGCAGACCCCGGGGCCGGCAGCGGAGAAGAAGCTGAAAAAGGCAGCTAGGACAGCCTCCCCTGTACCCAGGCCAGTGGAAGCCAGCCCGGGGGCGAGCAAGAACGGGGAAGGCAGCAGCCCCAGCCCCCTTGTGGAGAGGTCGTCCTCTAACAACAGGCCCGGCCGAGAGAGTCCCTCCACTCCTCTCAGCTCCAGGGGCGTTTGTGTCACCCCCATCTCTGAGGACAAAAAGCCTCTGCATTCTGCTGGCCAGCCCAGAAGGATCACACTAAACACTCTCGAAGCCTGGAGCAAACCCAGCACCCCGATTGGCCCCACCCCCAGGCGGGTGGTTCTGACTCCTGTAGCAAGTGGATCACCTGTGTCATCCAAATCTTTGATTGCTACTTCGCCTTCTACAGAAAAAGCTAAGCACGAGAGACCGTCCCCTCCTACAGACCCAGTGTGCCAACCCCCTGAACCAAAGAGGCCCAAAACTGAGAGGATGCTGGTGTCTGGCACCCCACTCTGCTCAGAGCCCAGCACAGAGGAGCCCCAGCACATAAAAGCCCTGAACCCATGATCCTCCTCAcagcacacagactgacactgcGTCTACATGGGGACTCTCTCAATgcatataacaaaaaaaacacagggtCTTGAAACTTGCTTAATGTTGACTTAAAACCTTCTCTCTAAATGATTCCACCTCCCATGCTGCCTCTTCAACAGGGTTGtactaattaatgtattttgctattatttttggaaatttgcatttgtatattaCTTGATAtatttggaaccatttttttccaattgtaGTCctgcagtgttgttgtttttccaactGGTTAGGTAAGTTGTTCAAAGTCCTTTCAGTCACTTTCAGAGATGACATTTGTAGCTTTTATGTATACcataaaggaaaaatgaaaagatggtgattttaaattaaaattccaCAGACCTGTTTAAATGCAGTGGTATCTTTATCCTTTTCTAGTGTGCATTTTGTACTATTTCCCTCTTTAACAGTTTCtataaattgagaaaatgcACCTATAGAATCAAATCTGTCAATTGCCAGGATATATGAGAGGggtaataattttaaaaaacaaaatccttcaaTTAGTTCTTGATATCCCCTGCTTTTAAAGGGAATTATGGTGCAAACTTTTGGGAAATTAACATCGCCTTGAATTTGATTTAAGTGCTTGTCATGTGCTATATGCAGAGTTTAATACAGTACAAGTTTAACACTTAAGGAAAATACTGAAGAATGTCCATATTACATCTTTCTGATTTTAGTGCAAAAGAAAATAGGCTTTTCAATGTATGGtcatatacaaaaaacaatgaattggGTATTCTGCAGATAGTTCCATTAATGATTAGTCTCTAATACGTCAGCAACagtaaatctaaataaaacttattcttacaaatatttaagtatCCTGTTTACATTTGTAAGACTGAGAATTCTCTTCAACAAaggttttatatgtttttatatgtgccAGGGATCAGCTTAATGATTGCTTGAACTGAGACAGTTATTGTGTGTTGTAGAATTAAATGAAGTATTGATTTCAGGGATCAGATAAAGCTGCCCACCTCAATTTCATAACACAGTAATTAAGCTAGTCTTCAGTATATCAATCAGGTCATggactttaaaatgcaaaccaatGGTGTTTCTGATGAAAAACAGCTGTTACTTTAATGAAGACTTGTTCTGAAGACTGTTCTGATCACTGTGGGGAAAATGTAAACTTGAATATTGCACCTTTATGCGTTGTATACTTTGACAGTATCAATAATAAAGTAGTGCATTTTAAGCTTTATTGACACAAGCATGGGAATTTATAGAGTGGGCATATAATTTTTTCTTTATCTAATCAGTGTTCATTCCTTTATGACCATTTGTGCAGAGTGGAGTGTCTACAGTGACACCTGTAggataatacattaattgctGCTCAAATAAATGAGGTGAGATAAATGCAATACCCTACATATTGGATAGCCTGGCTTTGAAAAGATGGTGAATttccaaaatacatttctaaacatttttttgacaCCCATTATTTCTCTTTCAGTGTTATTCTTTTCAATCTAGGATGTTCAGACAGATATGATGTCATAATCCATAAAGTGGTA

Function

GO: NA

KEGG:

id description
K10751 CHAF1B; chromatin assembly factor 1 subunit B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91158 lncRNA upstream 104586 31790901 ~ 31792354 (+) False AMCG00014799
TU91145 lncRNA upstream 150040 31745523 ~ 31746900 (+) True G72926
TU91127 lncRNA upstream 193367 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 194505 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 304835 31524315 ~ 31592105 (+) True G72875
TU91238 lncRNA downstream 40414 31956252 ~ 31962969 (+) True AMCG00014811
TU91249 lncRNA downstream 50084 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 51518 31967356 ~ 31969205 (+) True G73018
TU91254 lncRNA downstream 56147 31971985 ~ 31995538 (+) True G73019
TU91281 lncRNA downstream 340171 32256009 ~ 32256776 (+) True G73045
AMCG00014807 mRNA upstream 6492 31865131 ~ 31890448 (+) True AMCG00014807
AMCG00014802 mRNA upstream 71626 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014799 mRNA upstream 98477 31790953 ~ 31798463 (+) True AMCG00014799
AMCG00014803 mRNA upstream 127279 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014805 mRNA upstream 131902 31764180 ~ 31765038 (+) True AMCG00014805
AMCG00014811 mRNA downstream 23715 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014810 mRNA downstream 97346 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014812 mRNA downstream 327116 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014815 mRNA downstream 480849 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014817 mRNA downstream 737905 32653743 ~ 32663154 (+) True AMCG00014817
TU91144 other upstream 142010 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 900577 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 916688 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 918115 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 1091199 30764351 ~ 30805741 (+) False AMCG00014777
TU91344 other downstream 626672 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1448917 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2323096 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2864284 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 3026173 34942011 ~ 34960447 (+) True G73343

Expression Profile