RNA id: AMCG00014811


Basic Information

Item Value
RNA id AMCG00014811
length 5240
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00014811
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 31939553 ~ 31962971 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAGGTTGTCCCCTGGTAACCAGCAGAAGGTTACGAGTTAAAGAATTGGATTATTTGATCATCTGACTACGGGAACGGAGGGAGTTGGGGTGACAAATTATATGATATTTGGATATTTTCAAGCAATACTTTTAATCGCGCCGTGTGGGGCATTTGATACTGCTGCCGTATAACTCTTAATGGACGTGTTAGAGAACTAGAGCGGATGGAAGAGAAAATATAAGTTAgacgaaaaaacaaacattgcttTGCTGCACACGGTGGTTTGAAATGTACGGCGATCTTGTACTGTGCAATAGCTTCGACTGGTGTTTAAAGATAAGCAGATCAACTCAATGGAGATCTAGTAGTGCTGCGTAGTCGTTTGCAGTTGTACCGTTTTACATTTGGGGGAGAAATAAAGTGTGCGTTACGGTGTCGTTGTAAAGTAAAGTTAAATTGGAGAAGAAACGCGCAATATGAGCCAGAccgaaacttttttttttaagcgcGTTGTTGTCAAATGAAACGTTGTTTTTGATCAGTGGTGCCGCTGCAGTTTTATGGATCCGTTTCCAAAAATATGACGTCTCTAGTAAAAAGTCGAGAGAGCGGCGTGTATAGTCACGTGTCGCTGGAATTTTAATCTGGACACCGAATGTATCTAAATTGAAATGAGCGACATGGTTAACgcatgaaaaaacaaacgtCTGTCCATTACACTGTGTGCAGTGTACTATATGTCTTTTAAAAGATCCGATGCGTTTCTCAGATACGTTTCTATTGGcgtactactgctaataatgcGTTTTAATTTTCGAACGGTATTTAATGTGTAGGTTATATTAAATGAATTCTTACCGGGTTACTTAACACACCCTATTCGGCAGTATTTCAATGCCATGTAGGTAACCTTTTATATGATCATTATTACATATGTATGCTAATGATATGTTAAAAAAACCACCGAGAGTCGGTATATGTTTTTACATCTTTAATGTAGCCtatgtgttttgttattaaaaataacaaagttCACAAAACCTGTACAAGTGGTCTACTCAGGACGCCTGTGAGCTAGCACGGGATATTGCTGGTCGAGCTGTTGGTTTGGGTTGAAGTTAGGCATAATAAATAAGGCCGATTTaagtgaattaatttaattgtcgAAACTGGGTATAATTGGAATCCGACGCTTTACAGCGAAGATCATTtggaaattacaaaaaaaaaataagaggaggaaaaaaaaaaaaccgtaAACAAGGAAGCCGGCGAAAAATGGCCGGCGACTGCGCCTACAACACACACTATGCTAATGATGAGACTTTTGGTAACAAACATTTGTTGGGCAGAAATCAGGAACTCAGTGGGGATGCTGCTGTGAAAGATTGCGCTGGGGAAGAGTCGGCTTCCTCGCCTTTCTTCGAGGTCATCGATGGGGTTCTGTATCGTAAAAAGTTGGAGAAAGGGTACATCCATTACAGGGAAGTACTGGACCAGGATAGGAGACGCAATGCCATTGCAACTTTCCATCAGAAGCGGCTTGGGAAGCTGCACCACACCTTGGAGGACACCTACAGATTTGTAGCAGAAAACTACTGGTGGGAAGGAATGTTCTTTCACATACGAGAATATGTCCTTGGATGTAAGGAGTGCAAAGAAAACCCTGAAAGAAGAAGTATGTACGAGCAATCCATCTCTAAAACCCTGACGTCGCATGGGAACGATCTGCTCGGCAAGCTGAACGGACAGCGCGGTCAGGGGCTCTTCTGTGACATCACGCTGAAGATGGACCGAGGCTCCTTCTCCGCCCACAAGGCCGTTCTGGCAGCTGTGAGCGAGTACTTCCAGGAAATTTTCGCCGAGATGGATTCCACCTCCAATCAAGAATCTGCCATTGACCTGACTGgtttCAGTGAGGAGAGCTTTCTGCCCTTACTGGAGTTTTCATATACCTCTACTTTGTCTCTGAAGCTGGAGAATCTCACAGAGATCTCTGCAATGGCCAGACACTTCCGAATGTGGCCAGTTGTGGAAGTCTGCAAAGCCATTGAGAGAGAGCAAGGACTTTTGGGTACAAGGATGAATTCTGGGCTACCTTGCCAAAAGGAGAGTGCTGGAAACCATGTACTGCAGGCTGCCTCTGTGGATGCTTCCAACACCGTTTGTAAGAATAAAACCCATCGAGATGGTTCCCTGCCCTCTGTGGAAAACTCTTTTTGTGACAGAGAGACAAATCATGAGGATTCTGTGAAGAACTCTTACAGCTGGGTTGGGGAATCCAGCAGCAATGGTTCTATTGTGAGCAAAACACAACTTCTGGAGGATAGCTTTAAAATGGCACTGACGCCCTCTAATGAACGGAGAGCTGAGACCCCGAGCAAGCTTCCCAAATACAGTACCTCTATGCCAAATGCAGGGCAGACAGATGAGGAGACCTTTCACTGCAGTCCCGTGCGCAGGCTGAAGTTGATGGATTTTAAATCGCCTTCAAATAAGAGAAAGTCTCCCCGCGGCCTTTCTTCCTCGACGCAGTCCCTCTCTCCCAGCCAGCAGCCAACCAACATGGCCCAGCTGGGCTCGCCTCTGCAGCAGAAGGCCGAGGATACTTTGACGGAGGAGGGGGGCAGCCTCTCGACCCCTTCCTCTTCAAAGTACAAACAGAAGCTGCGATTTTCTCACTCTGCAGACTGTGGCCAGGAGATGCTGTCTGCTTGCCCCATGAACTTAAGGACTCCAATTAAACAGGAGCCCATAGAGGAAGAGGTGCAGTCACCAAATACccttgaaaaatacaaacttcTCAGTGTCCTGGGCCTGCAGCGCAAGTCTTTGGTAGTGTGTGGCGAGGAACTCACAGGCTGGAGGCAGAAGAAGAGGCTCCGGAAATTGAAAGTGAGCAGCTATTCTCTCACTGCCAGACGGAAACCGAGAACTGTTCAAAATAAACCCGTTGGGCTCCTGGGAGTGGAGGGCCCGAGCAACACGAATCCAATGTCTCTGGGAAAACTCGCCGTGCTCCCGTCTCTAGATTGCCTGACATCCACTGGAAAAAGCAACTTGAGTTTAAAGAAAACCATCAAGACGGAACCAATAACTTTCAGTACGGAGGAACTGAGGCTGGACATGGGAGGGTGTGGCTTGAGCGGTGAGAGGAACACACGAAGTAAGGTGGCGTCTATGCAGTTAATGCTGTCATCTGAACGTAGATCTCTACGCAGTGGAAGGGAGCTGATGTCTCCGAGATGCGATATCAGCAAGAGTTCCGGGCTGCAGTTCCAGAACCTTCCGCGACTGCGACCCGGCAACGTTGACCTCCGCAGAGGGTTTAAGGATGTGACCAAGACGAAACAGGGAAATTTAGTGAAGGTGCCAAGCCGACGGTTGAATTTGCAGCAGAGCCATGTGGAATCCTTCTTGTCCCTTAAGGTGAAGAAGTCCATTGCCAAGACGTGTTCTTTGGATGAGTTTTCGGAGAGAGTCACGAGGAAAACCATCAGGGCACTCAGGAACAACAGGCAGGCAGAGATAGATGTGTATCCGCAATGTGCGTACCCCGGGAAGAATTTCTCTGTGAAGCAGGAAGTGCTGGAGCCAGAAAACCATATGCTTCTTGGAGATCTTGCAAGGCAGGGAAAGGAAACCGAATCCAGTGTATTGGGGGGGGAAAGCCAGAGCTTTCGAGCAGTGGTGTGCAAAGTGGAACCATTTTCCGAGCTgggcaaaagaaaaagcaaacccACGCAAAAACTTCTGGATGCTGGCTTTCTGTTTAACTTGTACCGACCTGGAAATGCCGAGGTGGCCACGGGCAGCACCGTCAAGAGAGGCGGTGGGAACAGGGATGTTGCCCTCAAAAAATCTGTCTCACAGCACAGTACCAAAGAGGAGAGGTTTGGCCGGAGCCAGTCTACGGACATAGCAAGCAGAACACGTGGAGCAGTGAGAGAAGCGCAGGCCTCTCGAGCCTTTCAACGGAACCTCCTGAAACTCGCGGGCAGCAGGCCGCTGGTGAAGAGAAAGCAATCCTGTTTGACTCCGGCTGATCTAAGAGCACAGAATTACATTCACAGGTCTACATTGAGGAAAGGCCGAGTGCTGCCTGAGCGTGAGGCGAGGCTTGCCCTGTCTGATGAACTACCAAAGAAAATACGGAAGCTTGTTAGGATCAAGAACAGGCAGCCAACTCTTCTGGAGGCCATTCGAAGGAAGCGGATCCAGGAACTCAAAGTGGGGCGGCCTCTCGGTCGGCGTGTCTCCGCAGTGGCCTCCCACACCTGCGCCGAATGTAAAGTTGCCTACAAAAACTGTGACGCTCTCATCATGCACAAAATCAGACACATTAAAGGAAAGCACTGGCCTTGCCCGTTGTGTAGCAAATCCTTCTTCAGGCAGAGAAATGTGCAAAACCACATACGCATGCATGACCAGAAACTCTACAAGTGCCGGCACTGCATCACATAGAACAATCCCAGGAAGGACTGGACATCTTCTAAAATgaggACCGCAGCCTGGAATGTTTGAAGAGCAAATTTACCATAAGATTGTTAATACATGTTATGCATTGAGGCAGAGAATCATGATCTTAGATATAATTATTCCTTTGAcaagatgtcttttttttttttttttttttcctttaggtACATAGATAAACTTAAGCCAAAATTTCTCAAACTTGAACCAGTTCTATAACCTTGGGAATTGGgacttgtgtgttttaattaatgtaagaTAATTATTTAAAGGTGGCataggtgatttttttttttttttaattatatataaaatgcacttAAGAGTGGCATTGTAAACCTAAGAAATTATTATGATAAGATGCTGAATTGGTTTTAGTACTGGGTATACTTGAAGGAATTGAAGTTTTTATGAATTAGTCTGTGTCGGTTTGTATTATATGTCAAATGTAATGAAGCTGCATGTTTTTGCAGCAGTATTTTAACAGGTTTTCTATATCAATTTAAAGTATGTAAAGTTGCctatttaaaaagggaaactTAAGTCTAAATgtgacctttaaaaaaataagtgaacCTAATTATTGTGAAgttaaatggttttgtttttaaaagagggCAGTCACtgcctttttatatttaagacctttgaaatatttaacGATAGGAACATGTATGGATTATGAAATATATAGAATTGGGTTTTAAGTCTGGAATATGGTAGCATCACGTAATTTTACCTtctgtcaaaaaaataaatttgaataaattttgcattttgc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91158 lncRNA upstream 147199 31790901 ~ 31792354 (+) False AMCG00014799
TU91145 lncRNA upstream 192653 31745523 ~ 31746900 (+) True G72926
TU91127 lncRNA upstream 235980 31703146 ~ 31703573 (+) True G72912
TU91126 lncRNA upstream 237118 31702162 ~ 31702435 (+) True G72911
TU91076 lncRNA upstream 347448 31524315 ~ 31592105 (+) True G72875
TU91249 lncRNA downstream 2951 31965922 ~ 31966189 (+) True G73017
TU91250 lncRNA downstream 4385 31967356 ~ 31969205 (+) True G73018
TU91254 lncRNA downstream 9014 31971985 ~ 31995538 (+) True G73019
TU91281 lncRNA downstream 293038 32256009 ~ 32256776 (+) True G73045
TU91348 lncRNA downstream 595310 32558281 ~ 32564339 (+) True G73105
AMCG00014808 mRNA upstream 23715 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014807 mRNA upstream 49105 31865131 ~ 31890448 (+) True AMCG00014807
AMCG00014802 mRNA upstream 114239 31802930 ~ 31825314 (+) True AMCG00014802
AMCG00014799 mRNA upstream 141090 31790953 ~ 31798463 (+) True AMCG00014799
AMCG00014803 mRNA upstream 169892 31766064 ~ 31769661 (+) True AMCG00014803
AMCG00014810 mRNA downstream 50213 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014812 mRNA downstream 279983 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014815 mRNA downstream 433716 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014817 mRNA downstream 690772 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014821 mRNA downstream 771897 32734868 ~ 32756137 (+) True AMCG00014821
TU91144 other upstream 184623 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 943190 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 959301 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 960728 30978216 ~ 30978825 (+) True G72785
TU90928 other upstream 1133812 30764351 ~ 30805741 (+) False AMCG00014777
TU91344 other downstream 579539 32542510 ~ 32561489 (+) True G73103
TU91511 other downstream 1401784 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 2275963 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2817151 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 2979040 34942011 ~ 34960447 (+) True G73343

Expression Profile