RNA id: AMCG00014817


Basic Information

Item Value
RNA id AMCG00014817
length 1653
RNA type mRNA
GC content 0.61
exon number 12
gene id AMCG00014817
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32653743 ~ 32663154 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGATTTTCAGAAAAAAGGGTCGGAGCTCGAGGtgtaataacaataactaaaataaataaaaaataaatacatgcacgaACACAAGCTGACGTTGGAGTCACCTTGGCGTTCGCCACAcgttgtgtttttccttttgtcgTAACGACGAGAGATGGCGGAGGAGCGGAAGCAGAAGGGCAGCATCACGGTGCTGCCCACTGAGTCCATGAAGGCCATGGCGGAGTCGGTGGGTGTGGGGCAGCTGCAGGAGGAGTCCTGCCTGGCGCTGAGCGAGGAGGTCAGCTACCGCATCAAGGAGATCGCACAGccGCTGTATGGGTTCCAGTCTCAGGAGTTCATCCCGTTTCGCTTCGCCAGCGGGGGGGGCCGTGAGCTACACTTCTACGAGGAGAAGGAAGTGGACCTGAGGAAGGAGAAGTGCCGTCTGAAGCCGCGCAGCACCCACGAGCTCTCAGTGGAGCAGCAGCTCTACTACAAGGAGATCACAGAGGCCTGCGTAGGCTCCTGCGAGGCCAAGAGAGCGGAGGCTCTCCAGAGTATCGCCACAGACCCTGGCCTGTACCAGATGCTGCCCCGATTCAGCACCTTCATCTCTGAGGGGGTGCGTGTCAACGTTGTCCAGAATAACCTGGCCCTCCTCATTTACCTGATGCGGATGGTCAAAGCTCTGATGGACAACCCCACTCTGTACCTGGAGAAATATCTCCATGAGTTGATCCCGGCGGTGGTGACCTGTATTGTCAGTAAGCAGCTGTGTCTGCGCCCAGACGTCGACAACCACTGGGCCCTGCGGGACTTTGCCGCACGCCTCATGGCCCAGAGCTGCAAGACCTTcagcaccaccaccaacaaTATCCAGTCCAGGATCACCAAGACCTTCACCAAGagCTGGCTGGATGAGAAGACTCAGTGGACGACGCGGTACGGCTGCATTGCTGGGCTAGCTGAGCTGGGACCTGACGTGATAAAGACCCTGATCTTGCCCAGGCTGCCAGTGGAGGGGCTGCGGATCAAGGCGGTGATGGAGGGCCCGGTGGTCAGCAACATCGACAAGATCGGTGCCGAGCACGTTCAGAGCCTGCTGCTGAAACACTGCGCCAGTGTGATAGCGAAGATGCGCTCCCCCCCGGACGTGGCCGAGCATTATCGAGTGGAGTTCGGCGTCCTGGGCCCGTTGCTCTGCTCCCACGTGGTCAAGGCCCGCACGCAGGCCGCCATGCAGGCCCAGCAGGTCAACCGCACCACGCTGACCATCACCCAGccACGGCCAACCCTCACGCTGTCTCAGAGTGGCTCGGGGGGTGGTCTGTCTCGCCCCCCCAGTATAATCAAGGTGCCCAGCTCCCTGACGCTGCCCATGCAGACCCTGATCCTGCAGCCGCTGGTCAAGCTGGAGTCGGGGGGTGGTGCGGGGGCTGGGGGTGGGTCCCGGACCGTCCAGAAATACATCGTGGTCTCGCTcccctcctcgtcctcctccacTGACAGCAAGGGCCCCAACGTTGGCCTGACcgccctctccccctcctctgccGCTGCCCCCCTCCCTGctacttcctcctcctcctcgggcGTCCCCCCACCCCTAGAGCCCAGCGTCAAACTGGAGCGGCCGGAGTCCCCTGGAATCAGCACGCACTCCCCCCACTGA

Function

GO: NA

KEGG:

id description
K03131 TAF6; transcription initiation factor TFIID subunit 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91366 lncRNA upstream 77864 32575447 ~ 32575879 (+) True G73120
TU91345 lncRNA upstream 86847 32565793 ~ 32566896 (+) True G73104
TU91348 lncRNA upstream 89404 32558281 ~ 32564339 (+) True G73105
TU91281 lncRNA upstream 396967 32256009 ~ 32256776 (+) True G73045
TU91254 lncRNA upstream 658205 31971985 ~ 31995538 (+) True G73019
TU91410 lncRNA downstream 9357 32672511 ~ 32681805 (+) True G73158
TU91472 lncRNA downstream 141514 32804668 ~ 32806309 (+) True G73212
TU91485 lncRNA downstream 406849 33070003 ~ 33070214 (+) True G73220
TU91514 lncRNA downstream 792457 33455611 ~ 33456414 (+) True G73247
TU91515 lncRNA downstream 792457 33455611 ~ 33645483 (+) False G73247
AMCG00014815 mRNA upstream 256235 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014812 mRNA upstream 398452 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014810 mRNA upstream 639352 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014811 mRNA upstream 690772 31939553 ~ 31962971 (+) False AMCG00014811
AMCG00014808 mRNA upstream 737905 31896940 ~ 31915838 (+) True AMCG00014808
AMCG00014821 mRNA downstream 71714 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014822 mRNA downstream 95811 32758965 ~ 32768979 (+) True AMCG00014822
AMCG00014827 mRNA downstream 1034369 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014831 mRNA downstream 2027931 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014833 mRNA downstream 2364703 35027857 ~ 35320982 (+) True AMCG00014833
TU91344 other upstream 92254 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 898813 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 1657380 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 1673491 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 1674918 30978216 ~ 30978825 (+) True G72785
TU91511 other downstream 701601 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 1575780 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2116968 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 2278857 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 2727480 35390634 ~ 35394649 (+) False AMCG00014836

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00059511 False 2463 mRNA 0.42 13 NC_007116.7 53691803 ~ 53761946 (+)
grasscarp (Ctenopharyngodon idella) CI01000081_01536670_01610329.mRNA True 1908 mRNA 0.49 14 CI01000081 1536670 ~ 1610329 (+)