RNA id: AMCG00014818


Basic Information

Item Value
RNA id AMCG00014818
length 1787
RNA type mRNA
GC content 0.50
exon number 5
gene id AMCG00014818
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32650176 ~ 32653420 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTCCCCAACCTGCGAGGCTCCTATTGCAAAAATGTTGATGTGGCTCTAATACCCCAAATCAGTAGGTTATAGACAAGATTAAAATGCCCATAATGCCGGGGTTTGTTATGATGGCCGTGCTGTACCTCTCCAGCTTCGCtcagggggaggagggggagcggCTGCCGAATAAATGCGAAGGGAGACGCGTCTGGCTGAAGCTGTTGACAACATCTGCGAGGGGATACTGCAGTACAGCGTACACGCCGAGAGGCCGGGCAGCCTCCGATACGCCAAGgGCACAAGTGAGACTATGGCAACGCTGAAGAACCTGGTGAATAAGGGGGTGAAGGTGGAGCTGGGCCTCCCCTACGAGCTGTGGGATGAGCCATCTGTGGAGGTCTCCGACATGAAGAAGCAGTGTGAGACCATGCTGGAGCAGTATGAAGACTTGGTGGAGACATGGTATTTCCACCATCAGGACCAACacTGCCTGAAGGAAGTGTGGAAAGGCGACATGGGgaagaagggagagggggagaagaagAGGATAGGGACAATGACTGTGAGCGAAGAGGGGGTGATagtggagaaggaggagggcaTGAGCGAGGGAGAAGTGGAGACAGTGGGAGGCGCAGCTGGTGGCAGCCCACATGATGCTGGTGAACTCTGAGGTGGATGGTTGGTTGGATGGCCGGACGAACGGACAGAGCTTTAGACTTTGTTTTCGAGTAAGATCCGAGGAACGGGAGAGTGGACTGGGCATGGTCCCCATGTCTGCAGAAACCTGGCTACTGGGACAGGACAGTCCAGGCTCTGGTTATTATAGTCCATGTAAAGATTCTGCTGCAGTCACATTTATAGAAAGTGTCAGGAATCAGTCAATTGACATCAatacaatcaatatatttaacttACAGGCAATAATGTATAGGTCAAGGACAGTATAGGTCACTACAGGCcattacagtgcaatacaccgcagtacagcacagtatagtgTAGTCCACTcaagtacagtgcagtatagtgtaattcaattaattaagtaCATTATATCGAAGTATTAAACAGATGAGTGCAGTTGAGAGTAGTACAGTCCAGTACACTATTTCGCAGTGCAGTGCAAGGACATATTCTCAATTGAGCTGCTTTTCAGCCCTGCTACAGTGCAGCAGACAGTATAAACCAAATCCCCCACGATCCAGCGCCAGTGACCCACCTGGACCAGCCGCTCCCCTGCAGACTATGCTTCAGCAGTGGCTTCAGATGCATCTTCTCTTCTATGTGTTTACACAAACTCCTGTCGAGCCTGGTGCCCCGCCGCCTTGCCTCCTTGGGCCACCCCGATTCTCAGGCTGGCCGTATTTTATTACTGTGTAGGGTTTCGGAAGGTTTTGTCTGCTCTGCGCTTCCAGGTGTGTTGGGAGGGGGCTGGTGGCGGGGTGGTGGGAGGCTGTTGTGAAGGGGGAGCCTTGATTACAATGTTCCTAACAGTATTGATGGGATTgaacagatacagacacactcagCATTGCACAGTCCTGACTCTGCCCAGTCACAGACAACACAGTTCCTGTACAATACAACTCCGCAAATGGCACTGTCACAGCACAGACTTGGGGGTGGGGAACACCGTACAGTTGCCATGTCGGCACACCTATCGAACACCTTGAAACCTTTTTTACAGGCTGCTGTCCCAACACTTGGTTATGCAACTCggctcattttgtatttttatttcttttgtatttttttttgtcttgttataaacttttaataaataaacaaattaaactaaaa

Function

GO: NA

KEGG:

id description
K22816 CNPY3_4; protein canopy 3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91379 lncRNA downstream 19655 32628529 ~ 32630521 (-) True G73132
TU91363 lncRNA downstream 75490 32569671 ~ 32574686 (-) True G73117
TU91353 lncRNA downstream 94231 32455306 ~ 32555945 (-) False AMCG00014816
TU91358 lncRNA downstream 126374 32523238 ~ 32523802 (-) True G73112
TU91351 lncRNA downstream 183760 32450422 ~ 32466416 (-) True G73106
TU91436 lncRNA upstream 54593 32708013 ~ 32708283 (-) True G73181
TU91437 lncRNA upstream 56424 32709844 ~ 32710115 (-) True G73182
TU91438 lncRNA upstream 57377 32710797 ~ 32711045 (-) True G73183
TU91439 lncRNA upstream 57827 32711247 ~ 32711703 (-) True G73184
TU91443 lncRNA upstream 135603 32789023 ~ 32790398 (-) True G73187
AMCG00014819 mRNA downstream 1181 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014820 mRNA downstream 8244 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014816 mRNA downstream 94643 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014814 mRNA downstream 327417 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014813 mRNA downstream 364240 32270685 ~ 32285936 (-) True AMCG00014813
AMCG00014823 mRNA upstream 138461 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014824 mRNA upstream 141585 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014825 mRNA upstream 417386 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014826 mRNA upstream 474258 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014828 mRNA upstream 1911066 34564486 ~ 34565202 (-) True AMCG00014828
TU91374 other downstream 31027 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 35370 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 386749 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 3251871 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 4317694 28329739 ~ 28332482 (-) True G72236
TU91480 other upstream 148438 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 2116163 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 2927206 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 3447938 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 3600354 36253774 ~ 36254187 (-) True G73612

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110532969 True 371 mRNA 0.53 4 NC_048573.1 20166595 ~ 20173950 (+)