RNA id: AMCG00014822


Basic Information

Item Value
RNA id AMCG00014822
length 3006
RNA type mRNA
GC content 0.40
exon number 10
gene id AMCG00014822
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32758965 ~ 32768979 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CATATAATATTAGTAAATGCAGCtccctttgtttttattccctgAAAAAGAATTTGATCAGCATACGACACGCAGCTATCTATTGAATGGAAGTGAACTGAATACAAACACCAACTAGCTCGCATTTTTTCCGTGTGACATTACTACTTACGgcattttaaagtgtatttttattgaaactTGGTTGTAATCCTAATTGTGACGCAGGCTACATTTTCTGAATCTGCATTGTGTTTGCGGATTTCTTCCTTTTCTCTGTCTGGGGAATCGGAAGTATTAAAAAACAGGCTTATTCAAATGACAATGTAACCTCTGACAGGACTTCAGCCGGTATTAGGCCACGCAGTGTCACCGTCAGAAAAGTGTTATGTTTCCGGCATTCTACATTGACAGAAATTATACCCAAACCCAAACTAATAAAGTGTGAAGGCGTCAAAGAATGTGTTCAATGTTGAACTAAAGTGTCACTTTTCTGACGGTGACACTATTTGATTTGCGTTAACGCCGCTGAGTTTCACTTAGttgtataaatacaaaaatatatacttcctTGAAATATCTCCAGGAAAAGGTTGAAATTCCCTTCGGTGCTAAACATCTCGATGGCATAGTGACAATCCCGGATGCGGTCATGGAAGTGTCAACAGCGGTCATTGTTACCCATGGAGCTGGAGGAGACATGAACTTTCGACATCTTGTTTCACTCGCAGCCTCTCTTGCGTCAAGTGGTTTTCTTTGCCTACGGTTTACCTGCAAAGGCCTTAACCTCGTTTACAGAGTCAAGGCTTATAAAGTTGTTGTGGAATACCTGAACAATATAAAGAAGTAtacattgcaaaatatttttgttggaGGACGCTCGATGGGAGCACGTGCTGCCGCTGCCACAGTCTTGCAACTAACTGAGACTGGGGAGGATATCATTCAAGGCCTGATATGCCTGTCCTATCCCCTGCACCCAACCAAGCAAAAGCACAGTCTGCGAACCAGTGACCTGCTGCTGATTGTTGAACCACCGGTGCTGTTTGTCTCCgggacagctgatgaaatgtgCGACAGGCTTCCTGGAAAGATGGCTGCAGAACCGTGGAATAAGTTGGAAATTGCCTACCCTGGCGTACTATCTGCAGTCAGATTTCAGTTTAATGCTTCCACGGGTTACGTGAAGGTGGTCAGCATGAAGTCCCAAGTCAGCCTGTGCTAGAGTGGTTGTCTCTCAAAGTTCTCGGAGCCTCCAAGCTAATGATGCATTTAATGGAATGTTGCTCCGAAGCGTTCCTATTGGTGCTGCAACACCTGTATTGGAAAGAATTCATTATTCTGAACGTAGTCCTTACAGGAATGCTCAGCAGACTGTGggTTTATTCCAGGGGCATTTTGAAAACCCTGACATGTCTGTATGAGCAGATGTTTGCTTTCCTGCAAGAGGTATCACAGATACAGCAAATGCCTTTTGTGAAGTACTTTGCTCTTCCTGCTgacatcaaaacatttttaggaCCTTCTTACTCCCAAGTGGTGGAAATTAAGCCGCCTGAAGTGCCTGTTGTGAAAAAGCTGCAAGTCACAGCCAGATCGGGCCTACTGAATAAACTTTTTGCATCTGGTGCTGGGAGAAATTCAGAGTACACAGAGCTCTCTCATTCAGGGATGAAAACCAAGTGGACTGCCTTAAAAGGGcttgaaaaaaatgatttgggAAACCCCGTGTTAGGACAGCATTCTGAAGATTTaaGAAACCTCCCTGAATTTGATGTAAAGGCTCTGTTAAGACAACCTCAAGGTGCTTCTAAGGTGAATTCCACTGCATCCCAAGATTCTTGGAAGGATGGAAGATATCTCCCACTAAAGAAAACCTTGATTCTTCAGAAGGAATCATATGTCTGGCAGATTGAATGGGCTGCATCCTTCAGTGATTTAGCAGCAAGCTTGAAGCAACTGGTTAACTGGTGCAAGAGAGAGAATTTGCTGTATGAGAGCAGACGCCTGAACTATCAGTATCTTAAGTGCCAGAGGCTAATGCATTTGGAAACACAGGGTTACAGCctcaaaagaaaattacatttctacaaaCAGATCTGCAAAAGTATGTTTCTTGGTACAAGGACTTTGAAAATGCCGCTTCCTTCCTTAATTACAAAATGGAAACGGTCAATGCAGCAGATGAAGTTCAGAGTAAAGGGTAAATTGTATAGACCACATTCCAAAGCTAAAAACCTAAAGAACTTGATATCAGCAGTGGATTACCAGTCGCCAAATGATGATAAAGTAAGTGGAAATATCCCGAATACCAGCTTGGAGAAAGATGACATTGATCAAATTTTTGCATCCATAGGCTTATAGCCATATATCAAGACATTCatcaactgaaatgaaaaatacactgaattgattatgaaattataataaatcacacTAGCTTGAAGGACATGACAATTCCTCCCTCCCCCAGAATTGTGCCAAACATCTTAATATGAACTGTATATGACAATTATTAAACATTGTATGCTcccccaaaaaagtaaatgtgtgAAGGGACTAACAAAAACAGTGTTGTACAAGGACTAACAATCCTGCCAAATCATGTTCTGTATTTGAATCAGTATTTTTAAGATAATGTTTTCAgggtattctttttttaaataattacaccCAATATTGTGTTCAGAAGAGTAATACTCGGTCCTGGCTCTAGCCAAGCGCTCAGTTGCTTAATTAGGACTGGTAAATTCTCCTTGACCATTCAGGACTCCCTATAGCACAGGTAGAATTATGTGTCATAGAATAATGGGGAATTATCGGTTGTAGACCCCTGCCAaagactttttaaatgaaatgtaatttgaagaGGACCCACTGTGAATTTTTTCACATGCTTTGCTTTACTTTGAATGCTACCAACAAGTTGTGAAACCAATACCATGCTGTATTATAGGGATGTGCATTTTGCTCATTAtgtcataaaaatatgtaattattaaaacgtatgtcttattttaattcaaa

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016592 mediator complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91410 lncRNA upstream 77160 32672511 ~ 32681805 (+) True G73158
TU91366 lncRNA upstream 183086 32575447 ~ 32575879 (+) True G73120
TU91345 lncRNA upstream 192069 32565793 ~ 32566896 (+) True G73104
TU91348 lncRNA upstream 194626 32558281 ~ 32564339 (+) True G73105
TU91281 lncRNA upstream 502189 32256009 ~ 32256776 (+) True G73045
TU91472 lncRNA downstream 35689 32804668 ~ 32806309 (+) True G73212
TU91485 lncRNA downstream 301024 33070003 ~ 33070214 (+) True G73220
TU91514 lncRNA downstream 686632 33455611 ~ 33456414 (+) True G73247
TU91515 lncRNA downstream 686632 33455611 ~ 33645483 (+) False G73247
TU91527 lncRNA downstream 876945 33645924 ~ 33653699 (+) False G73257
AMCG00014821 mRNA upstream 2828 32734868 ~ 32756137 (+) True AMCG00014821
AMCG00014817 mRNA upstream 95811 32653743 ~ 32663154 (+) True AMCG00014817
AMCG00014815 mRNA upstream 361457 32396687 ~ 32397508 (+) True AMCG00014815
AMCG00014812 mRNA upstream 503674 32242954 ~ 32255291 (+) True AMCG00014812
AMCG00014810 mRNA upstream 744574 32013184 ~ 32014391 (+) True AMCG00014810
AMCG00014827 mRNA downstream 928544 33697523 ~ 33778248 (+) True AMCG00014827
AMCG00014831 mRNA downstream 1922106 34691085 ~ 34931860 (+) True AMCG00014831
AMCG00014833 mRNA downstream 2258878 35027857 ~ 35320982 (+) True AMCG00014833
AMCG00014835 mRNA downstream 2602005 35370984 ~ 35382903 (+) True AMCG00014835
AMCG00014836 mRNA downstream 2625331 35394310 ~ 35412072 (+) False AMCG00014836
TU91344 other upstream 197476 32542510 ~ 32561489 (+) True G73103
TU91144 other upstream 1004035 31717118 ~ 31754930 (+) True G72925
TU90967 other upstream 1762602 30990063 ~ 30996363 (+) True G72787
TU90966 other upstream 1778713 30979570 ~ 30980252 (+) True G72786
TU90965 other upstream 1780140 30978216 ~ 30978825 (+) True G72785
TU91511 other downstream 595776 33364755 ~ 33366100 (+) True G73244
TU91569 other downstream 1469955 34238934 ~ 34239400 (+) True G73292
TU91608 other downstream 2011143 34780122 ~ 34780590 (+) True G73329
TU91622 other downstream 2173032 34942011 ~ 34960447 (+) True G73343
TU91690 other downstream 2621655 35390634 ~ 35394649 (+) False AMCG00014836

Expression Profile